Egra005346.1
Basic Information
- Insect
- Ephydra gracilis
- Gene Symbol
- bab1
- Assembly
- GCA_001014675.1
- Location
- JXPQ01024465.1:9899-11655[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-18 1.6e-14 53.5 0.0 1 43 55 98 55 100 0.95 2 2 1.8 4.6e+03 -2.4 1.9 4 17 196 212 193 220 0.64
Sequence Information
- Coding Sequence
- atgcttgaaaactCGCATGCTTGGATGAGCGCAACGGGCTCCTCGATAGCAGCAGACAGCTACCAGTATCAGCTGCAGTCGATGTGGCAGAAATGCTGGAACACCAACCAGAATCTAATGCATCATTTGCGTTTCCGCGAGCGCGGCCCATTGAAGTCATGGCGCCCAGAAACCATGGCCGAGGCCATCTTCAGTGTGCTCAAGGAGGGCCTGTCGCTGTCTCAGGCAGCGCGCAAATACGACATACCCTATCCAACATTTGTGCTGTACGCCAATCGCGTGCACAATATGCTGGGGCCTTCCATAGATGGCGGGCCCGATATGCGTCCGAAGGGGCGCGGGCGACCGCAGCGCATTCTGTTGGGCATTTGGCCAGACGATCACATTAAAGGTGTTATCAAGACGGTCGTTTTTCGCGATGCCAAGGATCTGAAGGAGGAGGGGCTCGCACATTTGCAATACGGCCGCCATTCGCCGATTTTCCCGTTTCAAGATGTGCCGCCGCTAGGCTATCCGGGCACGAGCAGCAGCGCCTGCGCGAACGGCATGCCTGGCACGCCAGTCGCTGAACAAATGTCGCAGGAGGCGACGGCCGCCGCTGTGGCCGCAGTCGCGCACAACATAcgccagcaaatgcaaatggctGCAGCTGCACATCACCAGCACTCAGACAGCACGCCGGCTACGAATCTTTTCAATTTACCGCCACATCTGCAGACACCGGGCGGCAGCGGGCCAGGCGGCTTGCCGCTGCCCAAAACTAGCATATCACCAGCACTCAGCTCGACGTCNNNNNNNNAGCTCGACGTCCAATCCGTCCAGCAGCAGTGCCGCTGGCCCGTTGCTGGGACCGCGACATGCACCGTCGCCGTTACTGCATTTCCCGGACAAACACCCAGTCGCAGCGTTACGGCATTGCCCAGTGAGTCACCCTTGCTGGCTGACGTCGAGATGGAGATGAGCTACAAGGCGGTGCGCAGCAGCATCGGCGGTGGTGGCaccgccagcagcagcagcagtgtgTACTCGCCGGGACGGGGTTTGTTTCCCGATGACATTGCGGATTTGGTGAGCGCTGTGGTAACTACAGCCAGTGGGGCCAGTAGCAGCAGCACAACTGCTACCCCAACCACAACTGCCATAGCGACGATATCCAGCCAAGGAGAGAGCTTGACTGGCAGCAGCATTAAAGTTGAGCCCATCTCCAATACCAGCGAGTAG
- Protein Sequence
- MLENSHAWMSATGSSIAADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDMRPKGRGRPQRILLGIWPDDHIKGVIKTVVFRDAKDLKEEGLAHLQYGRHSPIFPFQDVPPLGYPGTSSSACANGMPGTPVAEQMSQEATAAAVAAVAHNIRQQMQMAAAAHHQHSDSTPATNLFNLPPHLQTPGGSGPGGLPLPKTSISPALSSTSXXXLDVQSVQQQCRWPVAGTATCTVAVTAFPGQTPSRSVTALPSESPLLADVEMEMSYKAVRSSIGGGGTASSSSSVYSPGRGLFPDDIADLVSAVVTTASGASSSSTTATPTTTAIATISSQGESLTGSSIKVEPISNTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -