Egra013282.1
Basic Information
- Insect
- Ephydra gracilis
- Gene Symbol
- -
- Assembly
- GCA_001014675.1
- Location
- JXPQ01023259.1:8131-8889[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-18 1.2e-14 53.9 0.0 2 45 73 117 72 129 0.97 2 2 2.5 6.5e+03 -2.9 1.0 3 11 151 159 151 159 0.85
Sequence Information
- Coding Sequence
- ATGGTGCAATCAGTATATAGTCAAGGACCAACGCCGACACAATCGCCTGTTCACCCGGGCATCAGTGTCGGCTACAATATCACCAGCAGCAATGCAAATAGTCAAGTAACCACCAGTAATAACAATTCCAATCTCATATCAACCGGCAATGCTAATAACAACACAACCAGCGGTACTACGCAAGTGAAGCGCAAGCGTTCTGTCAATCCACAGGgtgatgaaaattttatacgtGCCCTGGAGGCAGTACGCTCGGGTGGCATTGGCTTTTGCAAGGCAGCGCGCCTGTATGGCTGCAACAATCGCACATTATGGCTGGAATATAAGAAGCGCGGGTATCCTATCTCGCGGCCGAGCATAAAGGCACGCGTGGTCAAGCAGGAACCCAATTCATCGCCATCGCCGACGCCGCCCTCCAATCAGGCCGACGAGGGCACGAACGAAAACTACGAGCATATGGCTGCCGCTGTAGCGGCACAAACGGCTGCGCTCAATATGCAAATACCGCCAACTTCGGACACGCCGACACCGACACTCATGTGCACGCCACATCATGCGGGTGCCGGCGGCGGTGGTGGAGTCATGAGTTTTCTTGACACACGAAACATGGACTTTCCGGCTAATTTACACACAATGCCACGACAACGATACATAGACGCAACTGGCGCTAGTGCGGgtggtggtgctggtgctggaACCATCAATGTCAATCCGGCAGCTGCAATGAATCTGCAAAGTATTAACTTCAACCCAATGTAG
- Protein Sequence
- MVQSVYSQGPTPTQSPVHPGISVGYNITSSNANSQVTTSNNNSNLISTGNANNNTTSGTTQVKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGCNNRTLWLEYKKRGYPISRPSIKARVVKQEPNSSPSPTPPSNQADEGTNENYEHMAAAVAAQTAALNMQIPPTSDTPTPTLMCTPHHAGAGGGGGVMSFLDTRNMDFPANLHTMPRQRYIDATGASAGGGAGAGTINVNPAAAMNLQSINFNPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -