Egra006564.1
Basic Information
- Insect
- Ephydra gracilis
- Gene Symbol
- -
- Assembly
- GCA_001014675.1
- Location
- JXPQ01039626.1:5101-6772[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-15 3.9e-12 45.9 0.0 1 43 344 386 344 388 0.92 2 2 0.0029 7.6 6.5 0.0 23 37 413 427 408 433 0.83
Sequence Information
- Coding Sequence
- atgaaccATTTACGTTGGATGGGTCATTCATCGACCATCATGGATATACAACGTAATTTGCGTCATGATGCTGAGAGCTGTGATGTGACTTTGGCCGCAAAGGCGCATTCCGTGCATGCACATCGCTTTGTGCTCTCTTCTTGCAGTGATTTATTGCGTTCGCTGCTGATGGATGTGCCGCTGGGTCAGGAGACAACACTAATTATACCAGATATAAAGGGATCCTTGTTGGAGAGCGTTATAGCGTTCATTTATATGGGTGAAACTAGTCTAAGTTCTGCGAACTTGTCGGAATTCCTTGAGGCTATCAATATACTAGGCATTAAGTCGGCCATAAGTTTTGAATGCAATCCGGCTACCTTAAATGCGAATACTACGGAAACTGCTAATACCACAGCCGAAACATTGAAAGCACTCACGGAAATACAAATGGGGCAAGTCGAATTGATGGATCAAGACAACGAGAATGGCCAGAAAATTGAGAATGAAAGCGTGATGAGCGAGCAACCGACGCGTGAATTATTCTTTGATGTCTACGGTGAACCGCCGGCAAAAATAAGTTATGCTATTGAACACCTGCCTGGCACTACCACAGCGAGCGAATTCATCTTAACTGAAAATTCGGGTACATTTACGCTAACACCAAATACTAAATTAGAATCTACAAGCAATTCAGATCCTAACGTAATCGAAGAAATCGAAGATGAGGATGTCGATAGCCAAATAATTGAAGAAGAGTACGCTAGCACAACTGATCCTATTATTGAGGTAGGCGATACAACAGAAAATTCGTCAAATGCAACTACGAATTCCATGGCTTTGATTTATGCTAAGTCTAAGGTCAAATCTACATTTAAACAGCAACAGCTACCAGAACACGATCAGCAGCAACGAATCGAGCAAAAAATGGACAGTTCGGATGTAGTATCGACTACAAAAGAGGAGACTACAACCGACATGTCGCAAATGTATAAGCTACAGACAACCGAAGACAATTTCTCCAGTATGAATGAGACAAAATTACTACAAACGGACGATGCGCTAGAGCTGGCAGTGCAAGCAGTACTCAACGAAGGTTTCAGCCTGGCAAAGGCTGCAGTCAAATATGACGTGTCAAAGACCGTATTGTGGCGGCGTGTACGAAAATATCCCAATTACATGAAGAATACACGCGAAAATCCAGTATTTACCGAGGCATACGATCGCTTGCGCAATGGTGACCCACTGAAGAAAATCAGCAAAGAGCTAGATATACCAATGTCAACATTGCATCGTCACAAGGTGCGTTTATCACAGCAAGGCCGCCTGCCGGCTTACATGTCAGTCAGAAAAAGAGAGTCACTCTCGAAGGAGGAGCTAAAGGAGCTCGCGGAAGCGGAATTCGAATTGGGCGATATTAAAGAAGAGATCATACTATCATAA
- Protein Sequence
- MNHLRWMGHSSTIMDIQRNLRHDAESCDVTLAAKAHSVHAHRFVLSSCSDLLRSLLMDVPLGQETTLIIPDIKGSLLESVIAFIYMGETSLSSANLSEFLEAINILGIKSAISFECNPATLNANTTETANTTAETLKALTEIQMGQVELMDQDNENGQKIENESVMSEQPTRELFFDVYGEPPAKISYAIEHLPGTTTASEFILTENSGTFTLTPNTKLESTSNSDPNVIEEIEDEDVDSQIIEEEYASTTDPIIEVGDTTENSSNATTNSMALIYAKSKVKSTFKQQQLPEHDQQQRIEQKMDSSDVVSTTKEETTTDMSQMYKLQTTEDNFSSMNETKLLQTDDALELAVQAVLNEGFSLAKAAVKYDVSKTVLWRRVRKYPNYMKNTRENPVFTEAYDRLRNGDPLKKISKELDIPMSTLHRHKVRLSQQGRLPAYMSVRKRESLSKEELKELAEAEFELGDIKEEIILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00653637;
- 90% Identity
- iTF_00653637;
- 80% Identity
- iTF_00653637;