Egra005788.1
Basic Information
- Insect
- Ephydra gracilis
- Gene Symbol
- retn
- Assembly
- GCA_001014675.1
- Location
- JXPQ01007476.1:1-10649[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-19 2.5e-15 56.8 0.0 18 89 1 70 1 70 0.94 2 2 2.7 9.4e+03 -2.7 0.0 46 62 101 117 97 148 0.60
Sequence Information
- Coding Sequence
- ACACCTATAAATCGGCTTCCAATAATGGCCAAATCTGTGCTGGACTTATATGAATTGTACAATTTGGTAATAGCGCGCGGCGGGCTTGTCGATGTGATCAACAAAAAACTGTGGCAGGAAATAATTAAAGGGTTGCATTTGCCATCGAGCATCACCAGCGCGGCATTCACATTGCGTACACAATACATGAAATACCTGTACCCATACGAGTGTGAAAAGAAGAACCTCAGCACGCCAGCTGAATTGCAGGCAGCCATCGATGGCAATCGGCGCGAGGGTAGACGTTCTAGCTACGGCCAATACGAAACcatgcacacacaaatgcaaatgCCACAAATTGCACGCCAAACGCTGGCGGGTGGCATGCAGCAAATGTCGCCGCTGGCCCTGGTCACACATGCCGCTGCGGCCAACAATCAGCAGGCACAAGCGGCAGCAGCCGCCGCCGCAGCTGCACATCACAGACTGATGACGCCGACGTTTGGTCAAGTGCCCAATCTAGTTAAGCACGAGATCGAGCAGCGCATGATGGAATATTTGAAGCTGATACAGGCAAAGGAGGAACACAACGCAATGGCTGCGGCGAACGGTGTGGCCAATGCGAATGCTGCTGCAAATGCGACTGGCGCATTGAGCGCGGCTACAGCGCTCGCGCACAGCCAACAGCAAGCGCAGCATCAcagccaacagcagcaacagcagcaacaacaacaacagcaacaacgacgtCGCTCACAAAGTCCCGAAATCAGCACACGCGATGCATTGAATGCACTGGAAATGTCACGTGTTGCGCTGTGGCAAATGTATCACAACAACACCAGCCCGCCAGCATCGGTTAATGCTTCGCCTCAAGGTAACGCCATCAACAATGGCAACGATATGCAACGCGAAGCACTAAACCTATCGGACTCACCACCAAATCTGAATGCAACGATTAAACGTGAGCGCGAGCGTGAACCCACACCAGAGCCGGAGCGCGACGACTTTCAACAGCACGAGCCACCACCAGCGAAACGTTCTATTGCGAGCAGCCTGATGCCACCGGGATTTCCAAACTTCTATCTGCCACATAACATAGCGGCGGCTGCCAGCtaccatcagcagcagcagcagcagcaacaagccgCTGCACAGCATGACTCCGACAATGATGAACCAGATGAAGAGGACGATGACGACGCCGGCGCgcataatacaacaacaactagtTCAACCCAAGGCGAGCAACATTTAAATggccatcatcatcatcatcatatgCATAACCATCACGAGGACGATGACGATGAGCACTTGCAGGCTAGCCACCATGCGCATCATCTGAGTCAGCACGAGCTGCACACAGACCGGTCCGATGACTCGGCCATCGAGAATTCACCAACGACCTCAGCTGGCAATGGACATGTCTCGCCGTTGTcaactaaaaaaatgcatttgtcgaagcagcagcaacaagatACATTGCAggacaagcaacaacaacaacaacaacagcaacagcatagCAATTGCCAGAACGCGAGCCAAGCGAAGCACAAGGTCAGCAGACTGACGTCAATGGATGCAATGGAAACCTTAAATTTACTGAGTAGCATGCAATTCAAAGTGGCACGAAACGGTACCAGCGCTAATGGCGAACAGCAACTAATTGTTAATCTCGAATTGAATGGCATCAAGTACACGGGGGTGCTGATAGCCAATGCAGCCGAAAGCGATGCCAAGCAGCTGCGGCAGCAGCAAGatgaacacaacaacaacggctGCCGGCGCAGCACCAGCAGAATGAGCGGCAAGCATAGCAATAAAGCGCAGTCGACACAGCAAAATGAGGACGAGGCACACGTAACCGCTGCCAGCCAGCATGCGAGCGAACCAGAGGAGCAAGCGGACGCGCTGGCAATGGCAAGTTGTAAGGCCGCAAGCGATGAGCATGCGTTGCTTATGAAAAATCAAGCAGCAGCAAACTTAAGTACAACAGCTATAACGGCAACAACAGCATTAGTTGATATGGAAACGTCAAAAGCCAATGCACAAATCGCGCACACCCAAACAGTGGCCGATGCACAGGAGCAGCTTAGCAATGGCGCAGTGGCTAAGGCGGCTGCTGCTATACAAACGCTCAAGGATGCTTTAATAACAACTACAACGTAA
- Protein Sequence
- TPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYETMHTQMQMPQIARQTLAGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAAHHRLMTPTFGQVPNLVKHEIEQRMMEYLKLIQAKEEHNAMAAANGVANANAAANATGALSAATALAHSQQQAQHHSQQQQQQQQQQQQQRRRSQSPEISTRDALNALEMSRVALWQMYHNNTSPPASVNASPQGNAINNGNDMQREALNLSDSPPNLNATIKREREREPTPEPERDDFQQHEPPPAKRSIASSLMPPGFPNFYLPHNIAAAASYHQQQQQQQQAAAQHDSDNDEPDEEDDDDAGAHNTTTTSSTQGEQHLNGHHHHHHMHNHHEDDDDEHLQASHHAHHLSQHELHTDRSDDSAIENSPTTSAGNGHVSPLSTKKMHLSKQQQQDTLQDKQQQQQQQQQHSNCQNASQAKHKVSRLTSMDAMETLNLLSSMQFKVARNGTSANGEQQLIVNLELNGIKYTGVLIANAAESDAKQLRQQQDEHNNNGCRRSTSRMSGKHSNKAQSTQQNEDEAHVTAASQHASEPEEQADALAMASCKAASDEHALLMKNQAAANLSTTAITATTALVDMETSKANAQIAHTQTVADAQEQLSNGAVAKAAAAIQTLKDALITTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -