Eman041065.1
Basic Information
- Insect
- Ephialtes manifestator
- Gene Symbol
- -
- Assembly
- GCA_963970395.1
- Location
- OZ019980.1:11420464-11424042[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.7e-05 0.0088 17.8 0.2 1 23 330 352 330 352 0.96 2 10 0.0021 0.39 12.7 1.6 1 23 358 380 358 380 0.91 3 10 6.6e-06 0.0012 20.5 0.5 1 23 385 407 385 407 0.99 4 10 0.00011 0.021 16.7 0.1 3 23 415 435 413 435 0.97 5 10 5.4e-07 0.0001 23.9 0.8 1 23 441 463 441 463 0.98 6 10 4.4e-05 0.0083 17.9 0.3 1 23 470 492 470 492 0.95 7 10 1.2e-05 0.0022 19.7 1.0 2 23 499 521 499 521 0.98 8 10 0.00017 0.032 16.1 2.7 1 23 527 549 527 549 0.98 9 10 5.8e-06 0.0011 20.7 1.0 1 23 555 578 555 578 0.95 10 10 7e-05 0.013 17.3 1.7 1 23 611 633 611 633 0.96
Sequence Information
- Coding Sequence
- atgaatacaaacaaaattacTATTGATAAATGTCGTTTGTGCTTGGCTGACGGTGACAGAAACAATCTGACGCCCTTATTTGGTGACAATGATAACACTGGCCTCTCGTTAGCCACTAGAATAATGGTCTGCTTGTCGATTCCGgTCCAGGTCAGAGATTCCTTACCACTGAGTATTtgcaaaaattgtgaaaatcgtGTAACACAGTTTTACACATTCAGAGAAATCTGTTATGATTCTTATTATTCGCTGCTAGGACGTCGCATGACTAATGATGATCATAATTTTTTGGAAGATGCAATGGAGGAGGAAGAGAATCCAAAAATCAACTTAGAGAATTGTGGAAGTGATTTTAAATCAAAGAGACTAGAAGAATCTCAGTCTCATTTAGATCACAATTTACATGAATCAATACACTTAGTCACAGATATACAGTCAGCAGAAGGTAACATAACTGAAGAAATATATTCAGTACGATCTGACGAGGAAGATGTTACTGTAGAAAATTTGCAAACAAAATCACTCGCAGACGAGACAATATCAACGAATATAGAAAACAAATCCCACAGCCAAACTGAGGAAAAACAAGATTACGAGGATGAAATTTTGAGCGAAGAAGATGTAAATACCGATGAAGAAATTCACGAAATTAAGTACAAATGTTTGCGTTGTGATGGTATATTTCCGGACTTTGAGAGCGCGTCGATTCATTGCGCGGAATGTTTGCCTCTGGATGACGACGAAGTTATCGCATCGACAGAGCAAGAATCTATGGAACACCTTGACGAAACTCTCAAAGAACGGATAGAAAACGTAGCCACGGAAGCAATTGAAGACGAATCTTCAAATCCTCGAACAGATTCGCTTTCGACGAACTCGATAAACCAAAGAAAAAGCGTACTTTCGTACGGCAACGAGGATTCAAAAACTTCAAAACCAAAATCCTCCTCAAACCGTAAAAGCAaaatgcacgaaaaaaaatcgggACATTCTTGCCCAGATTGCGAGAGCGTTTTCTCAAGTGCCGCTCTATTAAGAAGACATTTGGTCGTCCATACCGGTGAGCGCCCCTTCGAATGTCCCGTATGTAAAAAGCGTTTTTCCCAAGTCGgtcaattaaattttcacaaaaattttcaCGAGAATCCGCGTTACCGTTGCGAAGTTTGCAAAAAGCCATTTTTGCGACCGAGCGATATTGAGAAACACATGAGAACTCACACGGGCGAGAAGCCCTACGGTTGCAGCGTTTGCTCAAAGTCTTTTGCCCAATTGGTAGCTCTGCAACAGCACGAAAGAATTCATACCGGTGATAAGCCGTACGTTTGCGAAATATGCGGAAAAAGGTTCTCGCAAAAGGCTAATAAAACGAAACACGTTAAGATCCATAAAGAGGGAGCGAAACCGCACACTTGTGAAATATGCGGACGAAGCTTTTCCGATCTGGAGGAAATGAATCTTCACAGAGCCGGTCACGGCGGAGGAAAACCGAGGAAATGCAACTATTGCGAGGAAAGCTTCAGAAAAATGTCCGAATTGGCGCAGCACATTAGGCGTTATCACACTTTTGAAAGACCTCATAAATGCGCTTTTTGTCAAAAGGCTTTCTACTCgatgtacaatttgaagcaacATGTTATGGTTCACACAGGCCAAAAACCTTACGCGTGCTCGCAGTGCGATCTGAGATTTACGCAAAAAGGAAATTTGACGAAGCACGTTGAGCGAAAACACGGGGACAAATATGGCATCGTCGTGGAGAGCGAAGAGGAGCAGAAAGAAAGCATTTTAATCCTGGCCGATAATCTGACGGACGATACGACTGATATCTATGATTGTAATAGTTGCAATTTGAAATTTAGCGATAAAGATCAATTTCAAAGGCATTTAGAACAACACTCCGATTATGtgttaaatagaaataaatatgtaGTTATAGAAGGCGACGAGAAGAATGAACAAGAAATGTTGATATTGTCGAACGGTCTTCCGGAAAATACGGTCGAACCGTTGGTTATCGAACGCGAGGAGACCGTTCAGGTGGAAACTGCCGAGAGTCAAAGTAATTTACAAATATACGAGATTAACCAATGA
- Protein Sequence
- MNTNKITIDKCRLCLADGDRNNLTPLFGDNDNTGLSLATRIMVCLSIPVQVRDSLPLSICKNCENRVTQFYTFREICYDSYYSLLGRRMTNDDHNFLEDAMEEEENPKINLENCGSDFKSKRLEESQSHLDHNLHESIHLVTDIQSAEGNITEEIYSVRSDEEDVTVENLQTKSLADETISTNIENKSHSQTEEKQDYEDEILSEEDVNTDEEIHEIKYKCLRCDGIFPDFESASIHCAECLPLDDDEVIASTEQESMEHLDETLKERIENVATEAIEDESSNPRTDSLSTNSINQRKSVLSYGNEDSKTSKPKSSSNRKSKMHEKKSGHSCPDCESVFSSAALLRRHLVVHTGERPFECPVCKKRFSQVGQLNFHKNFHENPRYRCEVCKKPFLRPSDIEKHMRTHTGEKPYGCSVCSKSFAQLVALQQHERIHTGDKPYVCEICGKRFSQKANKTKHVKIHKEGAKPHTCEICGRSFSDLEEMNLHRAGHGGGKPRKCNYCEESFRKMSELAQHIRRYHTFERPHKCAFCQKAFYSMYNLKQHVMVHTGQKPYACSQCDLRFTQKGNLTKHVERKHGDKYGIVVESEEEQKESILILADNLTDDTTDIYDCNSCNLKFSDKDQFQRHLEQHSDYVLNRNKYVVIEGDEKNEQEMLILSNGLPENTVEPLVIEREETVQVETAESQSNLQIYEINQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -