Eelu021460.1
Basic Information
- Insect
- Ephestia elutella
- Gene Symbol
- -
- Assembly
- GCA_018467065.1
- Location
- CM031578.1:437220-443199[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 9.7e-05 0.012 17.6 0.2 2 23 124 145 123 145 0.96 2 21 4.8e-05 0.0059 18.5 3.5 1 23 151 173 151 173 0.98 3 21 0.00029 0.035 16.1 2.9 1 23 179 201 179 201 0.97 4 21 4.7e-05 0.0058 18.5 1.2 1 23 207 229 207 229 0.97 5 21 3.4 4.2e+02 3.2 0.8 1 13 248 260 248 262 0.91 6 21 3.4 4.2e+02 3.2 0.8 1 13 278 290 278 292 0.91 7 21 1.8 2.2e+02 4.2 0.5 1 14 308 321 308 322 0.92 8 21 3.4 4.2e+02 3.2 0.8 1 13 338 350 338 352 0.91 9 21 1.8 2.2e+02 4.2 0.5 1 14 368 381 368 382 0.92 10 21 3.4 4.2e+02 3.2 0.8 1 13 398 410 398 412 0.91 11 21 3.4 4.2e+02 3.2 0.8 1 13 428 440 428 442 0.91 12 21 3.4 4.2e+02 3.2 0.8 1 13 458 470 458 472 0.91 13 21 3.4 4.2e+02 3.2 0.8 1 13 488 500 488 502 0.91 14 21 3.4 4.2e+02 3.2 0.8 1 13 518 530 518 532 0.91 15 21 3.4 4.2e+02 3.2 0.8 1 13 548 560 548 562 0.91 16 21 3.4 4.2e+02 3.2 0.8 1 13 578 590 578 592 0.91 17 21 3.4 4.2e+02 3.2 0.8 1 13 608 620 608 622 0.91 18 21 3.4 4.2e+02 3.2 0.8 1 13 638 650 638 652 0.91 19 21 3.4 4.2e+02 3.2 0.8 1 13 668 680 668 682 0.91 20 21 3.4 4.2e+02 3.2 0.8 1 13 698 710 698 712 0.91 21 21 3.4 4.2e+02 3.2 0.8 1 13 728 740 728 742 0.91
Sequence Information
- Coding Sequence
- ATGGCGCTGCAGAAAACATGTAATCGATTGTACCTGTTGCGAGAGCTGTTCAAAcctctcgtcgaaattcccgcCGACGGAGTCTCGCTGCGCGCTGCCACGCCGCGCGCTGCCACGCCGCTCGCTGCCACGCCGCTGGCCGCCGCGTTGCCGCTCCGGCGAGGAAGAGTCTCGAAGGgccgcgccgcgccggccgcctcCCTCGCGCTTAGATCGCGAGCGCCGCGTGGTTCGAGATTTTTTGAAGGCGGATTCGAATCATCTTCCGAAGATGACGAAATAATCCTATTTTTACGTTTTAAACGCGAATTTGAAGAGTTGAACATAGAAGATTTTAGAGAACCTATTTTTACAGGCATCAGTGACTGGAAATGTGAAGAGTGCAATAAACTGTTCCCATCGAAAGGCGCTTTACAAAGGCATAACAACATACACACCGGAAAACTCAACTATCAGTGCGACCTCTGTGGCAAGTCCTTTATTCACACATCATCGTTCAAGATGCACAAGCTCTCGCACTCCGGCATAAAGCCTCACTCATGCGACGTGTGCGGCCTCGCATTGATGACGCGGTCGCATCTCAAGCGGCACAAGCGAGTGCACAGCGGGGAGAAGAGGCATGAGTGTGGTGTTTGCGGGAGACGGTTTTCTGAACGTTACAATTTGCTGGCGCACAGCAAGTCCCACGAGAACGCTCCCGGCGTCTGCTCCGTGGCCGAGCCCGCGCCGCGGCGGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGTGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGTGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATATACTGTGTCAGCTCTGTGGCCGAGGCTGTTCCGGTGTCCCTTCTGTGTGGAGCGCTTCGAGAGGCGGTACGTGGTGCTACTGTATCTATACACTATGTATCAAAAACCCTGTTGTTCCTCTTAG
- Protein Sequence
- MALQKTCNRLYLLRELFKPLVEIPADGVSLRAATPRAATPLAATPLAAALPLRRGRVSKGRAAPAASLALRSRAPRGSRFFEGGFESSSEDDEIILFLRFKREFEELNIEDFREPIFTGISDWKCEECNKLFPSKGALQRHNNIHTGKLNYQCDLCGKSFIHTSSFKMHKLSHSGIKPHSCDVCGLALMTRSHLKRHKRVHSGEKRHECGVCGRRFSERYNLLAHSKSHENAPGVCSVAEPAPRRRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERWYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERWYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTVSALWPRLFRCPFCVERFERRYVVLLYLYTMYQKPCCSS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -