Eelu015222.1
Basic Information
- Insect
- Ephestia elutella
- Gene Symbol
- -
- Assembly
- GCA_018467065.1
- Location
- CM031574.1:4889272-4905733[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.75 93 5.3 0.1 2 17 572 587 572 588 0.90 2 11 0.00048 0.059 15.4 2.7 1 23 632 655 632 655 0.97 3 11 0.27 33 6.7 1.1 1 21 693 713 693 718 0.94 4 11 7.6 9.3e+02 2.2 3.0 2 23 720 741 719 741 0.96 5 11 0.00022 0.028 16.4 1.2 2 23 1055 1076 1055 1076 0.97 6 11 0.006 0.73 11.9 2.5 2 23 1082 1103 1081 1103 0.95 7 11 0.47 58 6.0 1.7 1 23 1121 1142 1121 1142 0.96 8 11 0.15 18 7.5 0.3 3 23 1183 1203 1182 1203 0.93 9 11 0.00026 0.032 16.2 0.4 2 23 1219 1240 1218 1240 0.96 10 11 7.4e-06 0.00091 21.1 3.5 1 23 1246 1268 1246 1268 0.98 11 11 0.17 21 7.4 0.0 1 20 1273 1292 1273 1294 0.91
Sequence Information
- Coding Sequence
- ATGTCGCAGCCAAAACGCAGATCTAGGAAAACAAAATTGGTGCCACGGAGTACAGAAGGAGGAGAGCCCGAACTTAAGGAAGTCATCGAAGAGGAGATTAAAATCATGAATACAATGAGTCTGGCTCAGCCACAGGCATCACAGCGACAAGCATCAAAGAAATCGGAGTCACTGCAGTTCAAAGTTGACATAGAAGTGGAGGAGTGGATTGATGATGAAATGTTTATAGAGGAAAACTTTGCCAAGATGCAATCCGAAAAGCTATCTGAAGCTTTAGAGAAAGAAATCAAAGAAGAAGTTGACTGGACTAATGATGAATATGGTAAGCTTTGGGCAGAAGCTGCCAGTGACAGTGAAACTGAAGAAAAAGCTCTCAATGAGTATGAAAAGCTCATCAAAAACCAGTTTGACCCAAGCTTATTAGCTGGACCATCAAAGGTAACTGAGCCTGAACCAAAAAAAGCAAAAACCGATGAGAAAAgtagtaaacaaaaaaataaaaaagatacaaCTCCTCAGCAAACTCCAAAACCTAGTTGGAAAGTTAAAAAATACGTCAGATCAGGGAAGAAATCAAGAATGAATCAACCAATAAAGCAGGTTTCTGATGTTAACTTGCAACCGAGACTAAAAATTAACATAGTATTTGATGAACCTGCCCCGGAAAATCCTGTAATTAACCAAATAGATCAATCAAGGACAGAAGAAAGACATTCACCAGCGAAAATGATCAATAAACCTCCTGTAACCTACGTAAATCCCAAGTCTGATACACGTCAATCaaatataaaagtaaataatCCAAACCACGTAAATCCCAAGGCTGATACACCTCAATCAAATATAAAAGTAATGAATCCAAATCACTTAAATTCCAAGTCTGATACACCTCAATCATATATAAAAGTTAATAATCCAAACCCCGTAAATCCCAAGGCTGATACACCTCAATCAAATATAAAAGTAATGAATCCACACCCCGTAAATCCTGAGTCTAATacaccattaaaaaaaagtccaaACCAGTCTATAAAAGCAAATAATCCAAACCAGTTAAGACCCATATATATAGTTCCAGCTAAAACTGACACACCGAAGCAAGTGAATAAAGATGACGAACCAAAAAAATCTACAGAGGATACCGAAGAAAATCCTTCAACATCCGAAATGATAGAAGATGTGGACAAATTACTTCAAAGACCGATATATTTCATTGAAGTTAACAAATCGGCTGAGAAAATTAATAGGGCGCAGCTACGCCATATGGCATACAAATCAATTTTAAAACAGAAAGCCAAAGTTGAAGTTGTAGATTTGGAACACATAATTGTTAATGAAGATGATATCTTAACTGCTGCCGATGCAATATCTAAGATTGACGATAGGGTAGCTCACATTTTAAACATCCAATTAAGAAACCGACTAGGCTGTACTCGATTTGAAACTATGGAAATATCTAGAGAAGACGCTCTGGTTGACTATGCTTTCCGCCAATGGTTTGTCTATCAGGGGGGACTGAATAAGTCTAGATCTGTACCGTTGTTGTACAAGTGTTACATATGCAATGACGGTTGGTGGCATTTGGAACCGTTCAGGAACCATATAAAGAAACATTCATATGTGGCTGTTGTGCTCGAGAAGCATAATCAAGAATGTAACATCATAGCCCATGATGGAAGACCAGTGAAATACCGAATGTTTCCAATTGACAATGAATGTTGGAGGTGCGGTAAAAGCTATGCTTTCCATTCGGAATTGGAACTAGGCTCATATAAATGTATCGCTTGTAGTACTAAATTATACACATGCCTGGCACTTAAGGAACATATGGGTATATGTCTTAGCGTATGGAAGAACCAGATGGAGGTGCAAGcaacaaaagatataaaagcgTACAAGTGCAAGATATGTCCGCAGATATTTTTCAATGAAGACGAGCTTCATAAGCATCAGTATATGTTTCATGTGCCTCGATCGGATTACCCGATTATTGTGTCAGTGCGGCAATGTTCTTATTGcaatcagaactatattgtgTACATGTTTCATTATTGCCGTATGAAATTAGTGCAGAAGCATGTGTGCAAGAATTGTGTTAGGCATTTTCCTTCGGGCATAGCGTTGAATATGCATATGAAGCTTACGAAGTTGCATGTGGAATGTGAATTTTGCCATGAAGTGGTGCCGAGAGAGTGTTGTATGATGGAGCATCTATTGAAGCATACGGATAAGTTCATGTTGGTGTATAAGTGCCTGATGTGCCCGAATAATGTGTTGTTGGAAGACTATGTGATGGTCCAGAGGCATGTAGCATACATTCACAAGTCAATGAAGCTAGCGTGGTGCTGTTCTAAGatGATAATCCCGAGAAGTTTGTACAAGGACAATAAGTGTAAAATTGATTGTAAGCCTTCTAACAGTTTAGCACgtaaaaaacgaaattctcTTCTCAAACCTTTGATCACGGGTGGAGGAAACAAGAGTGAAGATACAAATTCAAAGGAAACAAGTAAAGATTCTAACCGAGAGGAACTTAGTGATGTGTCTCCAAAGTCAGATGAATCCAACCATGACACCACAGTTTTAGACATTCCAGTAACAGATGAACCTATGGACACTGATACTAAGCCAacgataaaaattgaaaatttaatggATGATTACTATGAAGAGGATtctacaaatataaataatttagacaATATGGATAATTCAGACAATAAGGATAATTCAGACAATATGGATAATTCATACAATATGGATAATTCAGACAATATGTATACAGAAATCGATATCAAACCACCTATAATGCCTACAATCAAAATCGAACCTCAAGACACTGAAGAAATTGAAGTCAACATAACAGATGAGATGGAATTTGATGAAGTACCAGTGAAACAGGAGAAAACTGATGATTATGAAGCGGAAACATCAGGAATATCAAAAAACTCATCGGAAAACAAAGAGTTTTCTGCACAAATACAAAACTTTCTTGAAAACATGGACGTAGAACAATACGAGATTATGAATCAACGCGGGAATGATTTAAAAGAcaatatatatgtgtgcatcaATTGCGATTACCAAGGAACAAGGAGGCAATACAAGAAACATATAAAAGAATGCAAATCAGCCGACACTGAAGAGAAGTTTGTCGAAAGAGAATGCACGAAGTGTCAAAAGACGTTCAAATCAATGAAGGATTATGCTGTACACTTGCGAGTCCACGGATTTATCACGTGTCATTGCAAAGAATGTGATATGCAATTTGCGAATCTTTCGGCATGGTCGAATCATATAAATTCTCATATTAATCAGACGTTCACAAGGGTGAAATTGCTATCGAATGACATGAGGGTGTATATGTGTAAGATTTGTAAGGAAATAGTGCATAGGAGCTTATTTTTCAAGCATTGGGAAGTGCACATACATGAGGAATCGTGTTTGGAGGTGCGATGTGATTCCGATGGGAATATATCGAACACAATGCTACGAATTATAATTGacATATTCCAAGCAAATGTGAAGAGGAAAGTCCCAAAAAACTGTGTTGTATGCGGACGAGTGTTCATGagaatgaatgaaaaaaagcGACACCTAGTGGAGCATTTGTTGGAAGCGGCTTCTGAAGAGCGGAGCAATACCGAGTCGCTGCAGTGCCAGATCTGCAGAGCGGGCTTCGACAAGCCTGACCAGTTCCGCCGCCACATGCGAGACCACGCGGGCCTGCCCGTGTACCACTGCGAGCTATGCGATAAAACCTTCAGCGATTCCTCCAACTTCGTCAAACACAAGAAGGTCCACAATATGGAGGCTTACATCTGCGACGTTTGCAACAAAAAGTTCTTGGCTAAGACTTCTCTGGTCGCGCATATAGCTGTAAGTAGCTTTTTAACCACCGACTTAAATATCGTTATGTTGTAA
- Protein Sequence
- MSQPKRRSRKTKLVPRSTEGGEPELKEVIEEEIKIMNTMSLAQPQASQRQASKKSESLQFKVDIEVEEWIDDEMFIEENFAKMQSEKLSEALEKEIKEEVDWTNDEYGKLWAEAASDSETEEKALNEYEKLIKNQFDPSLLAGPSKVTEPEPKKAKTDEKSSKQKNKKDTTPQQTPKPSWKVKKYVRSGKKSRMNQPIKQVSDVNLQPRLKINIVFDEPAPENPVINQIDQSRTEERHSPAKMINKPPVTYVNPKSDTRQSNIKVNNPNHVNPKADTPQSNIKVMNPNHLNSKSDTPQSYIKVNNPNPVNPKADTPQSNIKVMNPHPVNPESNTPLKKSPNQSIKANNPNQLRPIYIVPAKTDTPKQVNKDDEPKKSTEDTEENPSTSEMIEDVDKLLQRPIYFIEVNKSAEKINRAQLRHMAYKSILKQKAKVEVVDLEHIIVNEDDILTAADAISKIDDRVAHILNIQLRNRLGCTRFETMEISREDALVDYAFRQWFVYQGGLNKSRSVPLLYKCYICNDGWWHLEPFRNHIKKHSYVAVVLEKHNQECNIIAHDGRPVKYRMFPIDNECWRCGKSYAFHSELELGSYKCIACSTKLYTCLALKEHMGICLSVWKNQMEVQATKDIKAYKCKICPQIFFNEDELHKHQYMFHVPRSDYPIIVSVRQCSYCNQNYIVYMFHYCRMKLVQKHVCKNCVRHFPSGIALNMHMKLTKLHVECEFCHEVVPRECCMMEHLLKHTDKFMLVYKCLMCPNNVLLEDYVMVQRHVAYIHKSMKLAWCCSKMIIPRSLYKDNKCKIDCKPSNSLARKKRNSLLKPLITGGGNKSEDTNSKETSKDSNREELSDVSPKSDESNHDTTVLDIPVTDEPMDTDTKPTIKIENLMDDYYEEDSTNINNLDNMDNSDNKDNSDNMDNSYNMDNSDNMYTEIDIKPPIMPTIKIEPQDTEEIEVNITDEMEFDEVPVKQEKTDDYEAETSGISKNSSENKEFSAQIQNFLENMDVEQYEIMNQRGNDLKDNIYVCINCDYQGTRRQYKKHIKECKSADTEEKFVERECTKCQKTFKSMKDYAVHLRVHGFITCHCKECDMQFANLSAWSNHINSHINQTFTRVKLLSNDMRVYMCKICKEIVHRSLFFKHWEVHIHEESCLEVRCDSDGNISNTMLRIIIDIFQANVKRKVPKNCVVCGRVFMRMNEKKRHLVEHLLEAASEERSNTESLQCQICRAGFDKPDQFRRHMRDHAGLPVYHCELCDKTFSDSSNFVKHKKVHNMEAYICDVCNKKFLAKTSLVAHIAVSSFLTTDLNIVML*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -