Basic Information

Insect: Ephestia elutella
Gene Symbol: RREB1
Assembly: GCA_018467065.1
Location: CM031583.1:8598074-8613936[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.015 1.9 10.6 0.5 1 23 92 115 92 115 0.96

2 11 0.027 3.3 9.9 0.1 1 23 298 320 298 320 0.97

3 11 0.0015 0.18 13.9 0.4 1 23 329 351 329 351 0.99

4 11 0.0009 0.11 14.5 2.0 1 23 357 380 357 380 0.97

5 11 0.0036 0.45 12.6 1.6 1 23 727 750 727 750 0.96

6 11 0.0003 0.037 16.0 1.3 2 23 945 966 944 966 0.97

7 11 0.031 3.8 9.7 5.3 1 23 972 995 972 995 0.97

8 11 0.11 13 8.0 1.3 1 23 1028 1052 1028 1052 0.91

9 11 1.9 2.3e+02 4.0 0.1 1 23 1076 1099 1076 1099 0.84

10 11 0.0022 0.27 13.3 0.2 2 23 1139 1160 1138 1160 0.96

11 11 0.035 4.2 9.5 5.3 1 23 1166 1188 1166 1188 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.015	1.9	10.6	0.5	1	23	92	115	92	115	0.96
2	11	0.027	3.3	9.9	0.1	1	23	298	320	298	320	0.97
3	11	0.0015	0.18	13.9	0.4	1	23	329	351	329	351	0.99
4	11	0.0009	0.11	14.5	2.0	1	23	357	380	357	380	0.97
5	11	0.0036	0.45	12.6	1.6	1	23	727	750	727	750	0.96
6	11	0.0003	0.037	16.0	1.3	2	23	945	966	944	966	0.97
7	11	0.031	3.8	9.7	5.3	1	23	972	995	972	995	0.97
8	11	0.11	13	8.0	1.3	1	23	1028	1052	1028	1052	0.91
9	11	1.9	2.3e+02	4.0	0.1	1	23	1076	1099	1076	1099	0.84
10	11	0.0022	0.27	13.3	0.2	2	23	1139	1160	1138	1160	0.96
11	11	0.035	4.2	9.5	5.3	1	23	1166	1188	1166	1188	0.97

Sequence Information

Coding Sequence: ATGCAAGGAGCCGCCACCGCGCCCGCACCATCCGCGGCCGAGCCACCCTCTTCGCAacAAATCAAAACAGAGGAGGTCATCACCCCAGCAAAAATAGAGATTGATGAAATGGACAATATGGTGGAAAAACAGGAAATTAGAGCAACCAGGACTACCAGCATCGATAGCGACAACCGTTCAGACAGAAGCGAAGAAGAAGACGCAAGGAAGTCCCGCAAGAGGGCAGCATCTTCTTCTCCATCCCCATTACCACTAGACAAGAGAACTACCAGATTCGAATGTCCCAAATGCCGACAGCGATTCGATTCCGCAAACGCATTTGACGTCCATAGATTCACTGTACATGGAGATGATACAAGAACCGGCTTCAATGATCTAACTTTCGTCGACTTTTCAAGCAAAAAGTTTCCTGAAATCGCCCGAAGTATCTGTGAACGAAACTCTCACGTATCTATCACTGAACAACGCTTCAGATGTGATCTCTGCTCTAGAGATTTTCCCTGTGGACAAGCTCTAGACATGCACAGAAAGATATGTTCAGGCACCACACGCATTCATAGCCCTGAACGGGATCGAAGGGAAGACTTTTTTGCTAATTTAGACCTCAGAAACCGTTCTTATGGTATTCCTGGAACATTAACACCACCTATGGATAGATTTACCCCAAAGTTTGATGATGGACACCACACTGCTGCCCGAGATTTAGCTGATATTCAATCCATTCTGAACGTCACATCAGCTGGAAGTCTTTTAGAAAGACTTACGGGTACTAGAGTAGGCCTAGAAAGCTCAGTTTTAACTCCTCCCGATACTATAATCAAAGAGAGAGAGCAAGAAGAAACGCAAGATAATTTTGCGGCTGAATTCAGACGCATGAAGTTACGTGGAGAGTTCCCGTGTCGATTGTGTCCTGCTAAATTTCCAAATCTGCGAGCTCTAAAAGGGCATAACAGAGTCCATCTTAGTGGCACTGGGCCTGGGCCTTACCAATGCAACATGTGTCCTCATGCATCTTTGGACAAAGCAGCTTTGGTTCGTCATATGCGAACACATAACGGTGATCGCCCTTATGAGTGTGCTGTATGCAATTACGCTTTTACAACCAAAGCTAATTGCGAAAGACATCTACGTAATCGCCACGCTAAAGTTACGAGAGAAGATGTCAAACGCTCAATAATCTACCATCCTTCAGAAGATCCCAATAATGATGAAGTAAACTCAAAGCTTGCTCGAGATGAAGTAAAAAGATCTCTTGCTTTCCACACGCCAGAAATTGAAAGACGTAATGAAAATACAGGGCGTGATACCCCTCTGACTCATTTCACTCCTAGTTTCATCGCTGACCGACATCCAGTTTCAGCTTTAGTAACTAAGCCATTGCCAGAAAATCCGACTCTGACACCAAGAGAAAATGAACAGACCATGCCAAGAATTAAAGTTAAAGGTATCGGTCAGCTTACTCAGATACCTGAATATAGGCCAGCTGATTTATCTGCGTTCAAAACAAATGACGTTCAATCCGACACATATGAGGAAGATGCTCCTGTTGACCTCAGCACAAACGATAGCTGTGATGTTCTTGATCTCAGTAAAAAGAAAAGAGACGTCGATAGCGACGAGCCAAAAGCCCCACCAAGACCGTCCTTTGAGCCTGACCCAGCAGCTGCTGCTGCATCAGCATTCGAGAAGACCCGATTATTAATAGCACAACAAAGAATTCTCGAGAACACATTGCCTAAAATAGATCCTGCTTATTATGCTTCACAACTATCGCAGTTATATGCCGGTACGGTACCAGGACTACCTGGTCTCCCAATACCGCCTTCCTTTCCAATCAATCCTTACTTTCTTCAACCTTCGTTTTTTCCTCACCCAACTGATTCACAAGAACTTGTCGAAATTAAACAACGTATCCAGAAAGAAATAATTCGAGGTTTGAGCATGTCAGGAGGAAGACTTGTTGCTAACGAACAAGATACTCAGCCAAAGCAAGAACCTGAAGATGAAGAACAGAAACCATTGCCTTTACCCAGATCGCCATCGCCTATTCCGCAATCTGAATCTCCCCGACCGCTTAGTAACAATATTGTGCCACAGAGCGACTCCGTTAAGATGGTCATAAAAAACGGCGTGCTAATGCCGAAACAAAAACAGAGGAGATACCGCACTGAAAGACCATTTTCATGCTCTCAATGCTCAGCGCGTTTCACTCTTCGCTCGAACATGGAACGCCATGTAAAACAGCAACATCCACAGCACTGGAGTGTGAGAAGACCAGCACCAAGGGCTCCCCCACCATACCCTAATCCTGACACATTAGTCGATCGTGTAAAATTTGCCTTGCTAGCTCGCCATCTTGAGCGCCCTTTGCAACAACCTGATCGGTCGCCAATACGTAGAGATTCTGATGAAGTTGCAGACAATGAAGAAGATGAAGATGATACTCTAGTTATCGATGAGGAACCAGATGCAGATAGCAAATCTGATGAGCACTCTGCTGCTCATCGAGCTGCTGCTGAAATTTTAATGGCGACCCGCCAGCAAGAACTTAACAAGGACTTTGATCTTAAAATTGCTGGAAATTTAATCAATAAACCTATCTCTCTTGTCACTGAAAAGACTGACGCAGAACCCGAACCAACTCAAATTCAAGAATCTTTGCCTGTACCTGTGCTGTCTGCTCGAAGtgatgaagaagaagatgaagaaGGTTTAGTTGCTTCGACAAGTGAAGGGAATAATTCTGGAAGCGATGAAAATAAATCGGATGCAGACAATGGAAGCCAACCACCAAAAAAGAAATCTGCATACAGTTTAGCGCCCAACCGTGTGTCGTGTCCATATTGCCATAGAAAATTCCCATGGTCTTCGTCACTTCGCCGTCACGTTTTAACGCACACCGGtcagaaaccattcaaatgccCGCACTGCCCACTTCTCTTCACTACCAAGTCAAACTGCGATCGCCATTTGTTACGAAAACATGGTGGATCAGCAAGGGCCATATTAGCCGAGCCAATCCCCGAAACTGTGTCTCCTCCTCAACCAGTAAATGACACAAGGACAGTACCGGAGAGGCCTTTCAAATGTGCCTCATGTCCAACTAGCACATTTTCTTCATTGGAAACTTTGAAGAAGCACATGTCATCTCGCCACGGCACTGGAGATTCGCAGCCAGGGTCACCCAATCCCGAAATTAACGACGATAATACCGACGGATTGGTCTTCAAGTGCCATCTTTGTGAAGGGTCTTTCGGTGATAGAGGCGGAGCTCTGGGACACTTGGCTTCGGCGCATGCGACAGAATACGAGCAACTTGTTAGCAAGGGAGCCTTGGATGCGGCCAGTGATCGGAGTGAGAGTGCCGATGATGATGAAAGGGGCAAATTCCCAGATCACGCCAACAGAAAGGTCGTCTGCGCATTTTGCGTCCGTCGTTTCTGGTCAGCCGAAGATCTGCGCAGACACATGCGCACACACTCCGGTGAGAGACCTTTTGCGTGTGATCTGTGCCGAAGAAGGTTCACCTTGAAGCACAGTATGCTGCGACATCGGAAGAAGCACAGAGACGACGCTACTGACGACGAGGAACCTTCACCACCGAACACGCCCATCGAAGCTGAGAATATTGCCAACGGATACCGCTACCGCGACGACGACGGCTCGGGTAGCGAGATTCCCAACAACGTCAACAACAACAACTCCCCTCCAGCGGCGCCATTCGACAAGAAACTCAAACTGGACATGACTTCCCGTAAATATTCCTCGGAGGCCGAAAACGACGGCGAAAACGGGAGCGATTTGATCGGGAAACTCCTGGGCATCCCTGATAAGACCATCATCAATAAGTTGCTGTCCTCAGCGGATGAAGCGGCCAAATTCCTTGGGGTAAACAAATGA
Protein Sequence: MQGAATAPAPSAAEPPSSQQIKTEEVITPAKIEIDEMDNMVEKQEIRATRTTSIDSDNRSDRSEEEDARKSRKRAASSSPSPLPLDKRTTRFECPKCRQRFDSANAFDVHRFTVHGDDTRTGFNDLTFVDFSSKKFPEIARSICERNSHVSITEQRFRCDLCSRDFPCGQALDMHRKICSGTTRIHSPERDRREDFFANLDLRNRSYGIPGTLTPPMDRFTPKFDDGHHTAARDLADIQSILNVTSAGSLLERLTGTRVGLESSVLTPPDTIIKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPEIERRNENTGRDTPLTHFTPSFIADRHPVSALVTKPLPENPTLTPRENEQTMPRIKVKGIGQLTQIPEYRPADLSAFKTNDVQSDTYEEDAPVDLSTNDSCDVLDLSKKKRDVDSDEPKAPPRPSFEPDPAAAAASAFEKTRLLIAQQRILENTLPKIDPAYYASQLSQLYAGTVPGLPGLPIPPSFPINPYFLQPSFFPHPTDSQELVEIKQRIQKEIIRGLSMSGGRLVANEQDTQPKQEPEDEEQKPLPLPRSPSPIPQSESPRPLSNNIVPQSDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPNPDTLVDRVKFALLARHLERPLQQPDRSPIRRDSDEVADNEEDEDDTLVIDEEPDADSKSDEHSAAHRAAAEILMATRQQELNKDFDLKIAGNLINKPISLVTEKTDAEPEPTQIQESLPVPVLSARSDEEEDEEGLVASTSEGNNSGSDENKSDADNGSQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPETVSPPQPVNDTRTVPERPFKCASCPTSTFSSLETLKKHMSSRHGTGDSQPGSPNPEINDDNTDGLVFKCHLCEGSFGDRGGALGHLASAHATEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDDATDDEEPSPPNTPIEAENIANGYRYRDDDGSGSEIPNNVNNNNSPPAAPFDKKLKLDMTSRKYSSEAENDGENGSDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_01302795;
80% Identity: -