Eelu043727.1
Basic Information
- Insect
- Ephestia elutella
- Gene Symbol
- -
- Assembly
- GCA_018467065.1
- Location
- CM031594.1:3995252-3998205[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.8e-06 0.00035 22.4 0.5 2 23 323 344 322 344 0.97 2 12 9 1.1e+03 1.9 0.2 5 14 450 459 448 463 0.84 3 12 0.021 2.6 10.2 1.6 1 23 478 501 478 501 0.96 4 12 0.0014 0.17 13.9 0.8 1 23 505 527 505 527 0.98 5 12 0.097 12 8.1 1.5 2 23 549 571 548 571 0.90 6 12 0.65 80 5.5 3.1 1 23 575 598 575 598 0.97 7 12 0.072 8.8 8.5 0.2 2 23 621 643 620 643 0.93 8 12 3.5e-06 0.00043 22.1 1.9 1 23 653 675 653 676 0.96 9 12 0.0032 0.4 12.8 0.9 2 23 692 713 691 713 0.96 10 12 0.0074 0.91 11.6 0.3 1 23 719 741 719 741 0.96 11 12 0.66 81 5.5 2.7 1 22 749 770 749 773 0.90 12 12 0.018 2.2 10.4 0.1 2 23 823 844 822 844 0.95
Sequence Information
- Coding Sequence
- ATGGCTGAGTCAAATCAAATAGTTGACTTCAACATGGACATAAACATCAAAGAGGAGGATGAAATCATTGAAGACATCACCATCCACATCAAATCAGAAATAGAAGACCCGACAACTGATCATGATCATATAACATCAGATAACCAAACTGATCATGATCATATAACATCAGATAACCAAACTGATCATGAACATATAATTTTAGGTGACAATGAATCAACTGATCATGAACACTTAAGAGATGTCAACACAAACTCTGATCATGATCACATAACACCAGATGTCACTGATACAAATGAAACATTAgaaaatgttaattttgatgtgaaagagGAAATGCTATCTCCAAATTATGAAAAAGACATTGTCCCATCACATAGTAACATTATGGTCACACTGCCTACAAATTCGGAGGCGGATATGTCTAAGAATATGGAAATTGATAAGGTTGATGTAAAAGAAGAGATGAGTGGAGAATTGGTTACATTTGACTATCCCAATTTTGATGACGGGAGTATGGATAGTGCTGAGGCAGCTGCCCTTGGTAATGTTGAGGCATGTTTGCAAGATGACGTTAGTGTTAAAGCTGAAAATGAATATTATACacatGATCATCTGAATGCCAATTACAGTGAACTGATCAAGCAAGAACCAGACCTGACTGTAACAGAAACACATTTGATTTCAAACAAAGTCATCAACACTACTTCAACAATCACACACCCTCAAGATGGCTTGATCGAATCGCGAACAACCAAAACTTTAGTCATGGAAATACTACCCATGTCAACTATATCCCAACCATTGAACAAAATCGGTAACCCTGAAGAAATTCTACCAACGACATATACAAATGATGATTATGATTCTTTTCAACTCAATTCTATTACTGGAAATGTGTTATCTTTAGAACAAGAGGCATACGGGCTGTTAAAAGCAAAAAcgaaaaagaataaaacaatGATAACATGTCCCAAATGTCCGAAAACCTTCAATAATTACTATGGATTGAAACGACATTTAAGTGTGCACGTTTCTATAGAAAACAGGGCGATGGGAGTGATCAAAGGTCTCGAGACTAGGAAAGAAAATCAACAAAAGAAACTGGAATTGATGGAAAAACATGTGGAACAGAAATCAGTAAAGAAAGAGCAGAAAAAAGGTGGCAAAATCAAAAAAGAATATTCTAGAACAAGATCAGGAAAGCCTATTATCAAAACAGAGGTTAAACGAAAGAAACTGAAGCCTAATATTAAGTCGGAAGATTCAGAGATGAAACCTGTTGATATTAAAATAGAAGAGGAGCCTGGAAAgctcaaagatgttaaaaaagAAGGGTATGAGTGCACATGCGGGAAAGTATTCCAAAGACGGAGCAGAATGGAGACATGTTTGAGATCTCACAACATGTATTCTGATATAGACAGCAAACATCCATGCGTTACTTGCATGAAACAGTTTAAAGACAAGGAGGAGTTAGCATTACATCGAAAACGGTTGCACAGGAAGAAATTCCCTTGCAAATTCTGCCCTACAGACTACGGAACCAGAAAAGAGCTGTTCAAACATTTGCAAATACACCAAAAAGTGCAATTGCTAGAGTACAAAGTTGTGTCAGAGTTCGTCAAAAACAAGAAAAAGCTGCGTTGCTTCATATGTTCGAAGAGTTATACAGAGTTGTCAGATTTAAAGTGCCATGTGATGGAGGATCATAAAGAGCCGTACATATGCCCTCTGTGTAGTGGCACCTTTTGTAAGATTATAGATTTTGCGCATCACACGAAGAGTTTCCATCCAGAAGTGGAAGGGCAATCGGTATTGGATGTCCTCGAAGCGTTCTCGAAGTTAGTAAGAGCTTGGAAGTGTGAGGAGTGCAATTTACAATTTCACGAAGCAGACAAATTAGCTTTACATCAGATAGAGATACATAGTCCTGAAATGAAACCGGACTGTCAGTTCCAATGTCCGGATTGCAGACGAGTCTTCATAAGTCAGAAAGGTTTAACATCCCACAGAAGAATACACCATAGCACAGAAAGCACAGAAGAGACTGAAGAAATAGAAAAAGGTGTAATGTGCCTAGAATGCCGAAAGATTTGTAAAGATATGGCGGCGTTAACCTCACATATGCGATTACATTCCCCTGAGAGGAAATATCCGTGTAAATTTTGTGATTTCCGTTTCGCTACGCCTGAAAAGAGGAAAGCTCATGCAGAAATACACAACAATGTGGGAGATCTCAAATACGTTTGTTTTATTTGCGAATATCAATGCAGTTCGGAAAACAGGTTGAAGCAACACAAGTTGTCCGTAAAACATTCTAGTATGAAAGAGTTTCTGCTAACAGGCAAACCGTTGATAGAAGAATCATCATCGAAGAAGAATTCTGGTAAAAAgaaggaaaaaaagaaaaaaggaaagAAGGATAGTGCGGAGAGTGATAGTGAACCTTGTGACGATGAAGTGTCATGTGATGTTTGTGGTGAAAAGTTTACGAGTGAAGCTGTGATGGCCGAACACAAACTGACACACCCTTTCATAGAGTTTCCCAACGAAGACAACCCCAGtaggatattttttaaatga
- Protein Sequence
- MAESNQIVDFNMDINIKEEDEIIEDITIHIKSEIEDPTTDHDHITSDNQTDHDHITSDNQTDHEHIILGDNESTDHEHLRDVNTNSDHDHITPDVTDTNETLENVNFDVKEEMLSPNYEKDIVPSHSNIMVTLPTNSEADMSKNMEIDKVDVKEEMSGELVTFDYPNFDDGSMDSAEAAALGNVEACLQDDVSVKAENEYYTHDHLNANYSELIKQEPDLTVTETHLISNKVINTTSTITHPQDGLIESRTTKTLVMEILPMSTISQPLNKIGNPEEILPTTYTNDDYDSFQLNSITGNVLSLEQEAYGLLKAKTKKNKTMITCPKCPKTFNNYYGLKRHLSVHVSIENRAMGVIKGLETRKENQQKKLELMEKHVEQKSVKKEQKKGGKIKKEYSRTRSGKPIIKTEVKRKKLKPNIKSEDSEMKPVDIKIEEEPGKLKDVKKEGYECTCGKVFQRRSRMETCLRSHNMYSDIDSKHPCVTCMKQFKDKEELALHRKRLHRKKFPCKFCPTDYGTRKELFKHLQIHQKVQLLEYKVVSEFVKNKKKLRCFICSKSYTELSDLKCHVMEDHKEPYICPLCSGTFCKIIDFAHHTKSFHPEVEGQSVLDVLEAFSKLVRAWKCEECNLQFHEADKLALHQIEIHSPEMKPDCQFQCPDCRRVFISQKGLTSHRRIHHSTESTEETEEIEKGVMCLECRKICKDMAALTSHMRLHSPERKYPCKFCDFRFATPEKRKAHAEIHNNVGDLKYVCFICEYQCSSENRLKQHKLSVKHSSMKEFLLTGKPLIEESSSKKNSGKKKEKKKKGKKDSAESDSEPCDDEVSCDVCGEKFTSEAVMAEHKLTHPFIEFPNEDNPSRIFFK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220955;
- 90% Identity
- -
- 80% Identity
- -