Eelu044192.2
Basic Information
- Insect
- Ephestia elutella
- Gene Symbol
- -
- Assembly
- GCA_018467065.1
- Location
- CM031594.1:11224199-11227333[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.27 33 6.7 0.3 1 21 74 94 74 95 0.94 2 17 0.68 84 5.4 2.6 1 21 204 224 204 229 0.92 3 17 0.066 8.1 8.6 1.0 2 23 240 261 239 261 0.96 4 17 0.091 11 8.2 0.1 2 23 369 391 368 391 0.96 5 17 0.0026 0.32 13.0 4.4 1 23 397 420 397 420 0.97 6 17 0.27 33 6.7 0.0 1 22 424 445 424 445 0.91 7 17 0.0082 1 11.5 0.6 1 23 453 476 453 476 0.97 8 17 0.035 4.3 9.5 1.2 1 23 481 504 481 504 0.95 9 17 0.0015 0.18 13.8 0.0 2 23 517 538 516 538 0.95 10 17 0.0029 0.36 12.9 2.3 1 23 546 568 546 568 0.98 11 17 0.00099 0.12 14.4 0.7 1 23 604 626 604 626 0.97 12 17 0.95 1.2e+02 5.0 0.7 2 23 631 652 630 652 0.91 13 17 0.00041 0.05 15.6 0.3 2 23 668 690 667 690 0.96 14 17 0.00012 0.014 17.3 4.0 1 23 696 718 696 718 0.99 15 17 4.9e-05 0.0061 18.5 2.2 2 23 725 746 725 746 0.97 16 17 0.0046 0.57 12.3 0.6 1 23 752 775 752 775 0.92 17 17 0.17 21 7.3 1.2 2 23 781 803 780 803 0.95
Sequence Information
- Coding Sequence
- ATGGCCAACATGGAAGGAAACATGGCGTGTATGAAGCTAAAACTCAGCAACATTTGCCAGAAAGAGAATTTTTGCTCCGTTTGTCTGGAAAGTGCAGAGAAATTGTGGTTATTGGATACAGAGTTTGACATCACAGTAAATGGCAGGTCACAGATGAAGAAACTCAAAGATTTGGTCCATTATATTTTCAGAGACTGGAAGGAAATTATTGCGAGCATCTACATTTGCAGTTACTGCACAGAGAGGAGCATACAATCGTACTTGTTCATCTACCATGCGAGGCAATTGTCTAAAATCATGTTGAACTATGTGGAGGATTTATCAACCAAAGTTGACGACGTTTATGTTCAATTAAAAACAAATCAGGATAACAATAATTCGAATGTCGTCATAGTACTTGATGAAATGGATGacgtaaataattatatagataTTTGTGAAACAACTGAAATCACAGCTAAAGAAGCTACTCATTTACTTTTAGACGAAGAAAAACAAATGAagcaaaataaattagaaaaagaaaacGTAAGAGTAAAATTAAACGCACCGGAAAAAAAATTGGTGAAACCTTACaggaaaaaaaggaaattttcaaagaatgtGATATATAAGTGTCTTAAATGCAAAAGAACTTTGACGACCTTAAATGCTTGGAATGAACACGAGAAGATCTGCAAATACCATCGACGAATAAGCAAAATAGTGCTGCCACTGCAATGTAAAGTTTGTTCTGAAGTGATGAAAACCCAAAGATTATTGTCATTGCATTACAGATTTCATGGTATTGAAAAATGCAAGATTTGCCATTTTATAATACCTGAAAGTGGACTCAGCGATCATTTAAAGTTGAATCACGCAgacgatatatttatttgcgaATTTTGCGATCACATATCTTACTCGACTGTAGCATCAGAAATTCACAAGAAGAAGAAACATGGCGACCCCCAATGTATCATGTGTTTGAAGACCTTTAAAGTTACAGAATTAAACAGTCACAAATGCAAGTTTAGATGCTTAGATTGTAAACAGATGCCGTGTCTTCATCATAAATATTTAGTTCACTATAGACAACAAGTGTTGAGTGAATCTAATAAGATTCAGTGCTTAGATTGTGAATATGTGTGTCCCAAACGTGAAGCTTTGATTGGCCACGTGAATAGAGAGCATTTAGATCATCATCCATTCACTTGTGCGCATTGCTCTCAACAATTCTACTCAAAAGTAACGTTAAGGAATCACTTGAATCGTTTTCACAGTGATAATTTCGTATGCGAATTTTGCGATGAGGACTTCAAAGTGCAGGCCATATTGGAAGAACATGTGAAAACATGCAAATTGATTGAAAGGCAGTATAAATGTGATAACTGTGCGTCATCTTTTGATACGCCACAAGAATTGTTATCACACAAAAACTCTAAACACAATGAAGAGATATTCCCTTGCAATTTATGCAATGGGAAATTTTTCTCTAACTTGAAACTGAAAGAGCACATGTTTCGGATACACTCTGGCATTCAGATCAAAAGAAAGAGGGGTAAATTGGAGTGTACAATATGCGACATCATATTCGACGATAAGAAAGAATTTGCGCAACACATTGCTGGACATGATTCAGTTAATAGTACAAAATTTCCTTGCAGGACTTGCAATAAGGACTTTGATGATATTAAGAAGCTTCATGCACATACTCGCATGCATGAAGATGACGTCATTAAATGCTCTGATTGCAATAAACTAATAACTAAAGCGTTCTACCCTCAGCACATGATATACTGTGGCGCTAACAGGAACGAAGACAACAGTTTTTCTTGTGAAACTTGCGGTAAAACGTTCCAATCGGAATCCATTTTGAAAATCCACAAGCAAATTCATTTAGACCGGGTTACTTGTCAGATATGTGGGAAATTAATGAAGCCTATGTATCTTAAAAGGCATTTAAAATACACTCATGGTCAAAAGAAGGATATAATACCGAAGAAGAGTGTAAAAGTGATTAAATGCGAATGGTGTGGCCACATGGTGACACGGAAAGGGGAATTGGAAGCTCATGTGAATAGGTTCCACTTGAAGATTAAGCCTTACGAATGCAATACTTGTAAAAAGACGTTTTGTGGGAAGGAGCGTTTGAAAGAACATATTCAAACTCATTCAACGGATCACATTAGATATTGTACTGTGTGTGGCAAAAAATTCGCCAATCAAGTATgcttaaaaatgcatttacggTTACATTCCGGGGTTACGCCGTACGCTTGTGATATATGCGGTGAAAAATTTAGATCTTCTAGTATAATGAAcactcataaaataaaaaagcacaCAGAGAAGGCTATATCTTGTCCGCTTTGCGATAATATGTTTTATTTGGCGAGAGAAATGCGCCATCATTTCAAGAAAGTACATTGGAAGAAAACGGGGCAAAAGTTTGATCCTCGCGATGTGAAAGAATTAGGGGAGGAATTTTACCATTTATTTGAAGATCGGAGAATACCGAAAGTTAACGAAAATGAAGTTGTGTTCTCGTGA
- Protein Sequence
- MANMEGNMACMKLKLSNICQKENFCSVCLESAEKLWLLDTEFDITVNGRSQMKKLKDLVHYIFRDWKEIIASIYICSYCTERSIQSYLFIYHARQLSKIMLNYVEDLSTKVDDVYVQLKTNQDNNNSNVVIVLDEMDDVNNYIDICETTEITAKEATHLLLDEEKQMKQNKLEKENVRVKLNAPEKKLVKPYRKKRKFSKNVIYKCLKCKRTLTTLNAWNEHEKICKYHRRISKIVLPLQCKVCSEVMKTQRLLSLHYRFHGIEKCKICHFIIPESGLSDHLKLNHADDIFICEFCDHISYSTVASEIHKKKKHGDPQCIMCLKTFKVTELNSHKCKFRCLDCKQMPCLHHKYLVHYRQQVLSESNKIQCLDCEYVCPKREALIGHVNREHLDHHPFTCAHCSQQFYSKVTLRNHLNRFHSDNFVCEFCDEDFKVQAILEEHVKTCKLIERQYKCDNCASSFDTPQELLSHKNSKHNEEIFPCNLCNGKFFSNLKLKEHMFRIHSGIQIKRKRGKLECTICDIIFDDKKEFAQHIAGHDSVNSTKFPCRTCNKDFDDIKKLHAHTRMHEDDVIKCSDCNKLITKAFYPQHMIYCGANRNEDNSFSCETCGKTFQSESILKIHKQIHLDRVTCQICGKLMKPMYLKRHLKYTHGQKKDIIPKKSVKVIKCEWCGHMVTRKGELEAHVNRFHLKIKPYECNTCKKTFCGKERLKEHIQTHSTDHIRYCTVCGKKFANQVCLKMHLRLHSGVTPYACDICGEKFRSSSIMNTHKIKKHTEKAISCPLCDNMFYLAREMRHHFKKVHWKKTGQKFDPRDVKELGEEFYHLFEDRRIPKVNENEVVFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -