Basic Information

Insect: Ephestia elutella
Gene Symbol: -
Assembly: GCA_018467065.1
Location: CM031574.1:12707910-12716594[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.031 3.8 9.7 7.5 2 20 264 282 263 285 0.92

2 14 0.00016 0.02 16.9 0.4 1 23 292 314 292 314 0.96

3 14 0.96 1.2e+02 5.0 4.9 1 23 318 340 318 340 0.95

4 14 0.018 2.2 10.4 3.6 1 23 345 368 345 368 0.94

5 14 1.8 2.2e+02 4.1 0.1 3 23 375 396 375 396 0.92

6 14 0.1 12 8.1 0.0 6 21 408 423 407 424 0.94

7 14 0.009 1.1 11.4 0.8 3 23 432 453 431 453 0.92

8 14 2.3 2.8e+02 3.8 0.7 1 20 462 481 462 483 0.93

9 14 1.4 1.7e+02 4.5 0.1 3 23 488 509 487 510 0.92

10 14 0.058 7.2 8.8 5.1 1 23 512 534 512 534 0.93

11 14 0.11 14 7.9 0.5 1 19 585 603 585 608 0.90

12 14 0.00018 0.022 16.7 2.5 1 23 613 635 613 635 0.98

13 14 5e-06 0.00061 21.6 1.7 1 23 641 663 641 663 0.98

14 14 0.00043 0.053 15.5 1.2 1 23 669 692 669 692 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.031	3.8	9.7	7.5	2	20	264	282	263	285	0.92
2	14	0.00016	0.02	16.9	0.4	1	23	292	314	292	314	0.96
3	14	0.96	1.2e+02	5.0	4.9	1	23	318	340	318	340	0.95
4	14	0.018	2.2	10.4	3.6	1	23	345	368	345	368	0.94
5	14	1.8	2.2e+02	4.1	0.1	3	23	375	396	375	396	0.92
6	14	0.1	12	8.1	0.0	6	21	408	423	407	424	0.94
7	14	0.009	1.1	11.4	0.8	3	23	432	453	431	453	0.92
8	14	2.3	2.8e+02	3.8	0.7	1	20	462	481	462	483	0.93
9	14	1.4	1.7e+02	4.5	0.1	3	23	488	509	487	510	0.92
10	14	0.058	7.2	8.8	5.1	1	23	512	534	512	534	0.93
11	14	0.11	14	7.9	0.5	1	19	585	603	585	608	0.90
12	14	0.00018	0.022	16.7	2.5	1	23	613	635	613	635	0.98
13	14	5e-06	0.00061	21.6	1.7	1	23	641	663	641	663	0.98
14	14	0.00043	0.053	15.5	1.2	1	23	669	692	669	692	0.97

Sequence Information

Coding Sequence: ATGCTGAATCAACCCACATGTCGCTGCTGCCTGGCAGTGGACGGCAAATTGATTTCCCTTCGCGAAGTTGACGCCGCTCAGCTTTACTTGAATGCCGTCGGAGTCCCGGTGGACCCGACGGACCGGTTTCCGCAGCATGTGTGCATATTCTGCCTGCGCACGCTGAGCAGGTTCGTGCGGTTCCGCGCGCGCTGCCACAAGGTGCTGGACGAGCTCTACCGGGCCCTGCTCCTCGGTGTTGAAGTAACGACCGAATACACCCAATCTCTGACTTCAAATTTTCAAGAATTAAAACCACAATACGTACAGACTAAAACTCATACCTTAGACGTACTTGGTGCGGGATGTGTAGATGAACTAAATACCAATCCTTTAGATTTTCCAGAAGCACCAATCGAATGTAAagtagaaaaagaagaaaagcgCGAAAGCAAAGACGTGGTCGAAGAATTACTTAAACCTAAGGAAGAGGCACCGAAAGATGTAGTTTTTGTAGAAAAAGGGAATGACACAgaatatttcgatgaaatagaTGATTTAGATTCATTTGCTGATGACGTAATTGAAGTGAAGAATGCaactaaaaatagtaaaaagaaaatcaaagaagcaaaaaaattaaatacagtcACAAAACCTGTGAAACGTAAAAATAAAGtgagaaaaaagtttaaatCCAACAAACGAGTGATGATAGATTTCGCGGAGAGTATAGGTTTTAATTTGACAGAGTTATCTCTTGATGAACAAATAAAAGAGATTGAAGATAAAAAGAAAGAGTCCGGTCTGATTTGTGAACTGTGCGGCAAGCGGTTCAACAATTCCAACTGTTTGAAAAGGCATAAGCACTGTCATGTTTTAAAACCTAAGAGTTTCATGTGTGACCTTTGCTCATGggtatttaaaaagaaaaacacacTAATAGAACACATGTTGGACCATAGATACATATTTAGCTGCAAGTCTTGCGATTTCAAAACGAAAAAGCGAATTACACTGAAAGCGCATCACGAATTCCATCAGGGAAAACGGTATCCGTGTAAATATTGTGATAAAGTGTTTGAGAAAGTCAGCAGTCACTTCACTCATATCAGATTCAAGCACGAGTCGGAGCTGCCGTGGTGCGATCTCTGCGGGGAAGGCTTCATCGGCGAAAAAGGCGTCATAAGTCACAAGAAACTTACCCACAACATCCTCGACGAATATCCATATACTTGTGCGTGTAATAAAAGTTTTAGGAGTGAAGCGGCGCTTGACAGACATTTAATAGTGAAGGGTTGTGATCTACCGAGTTGCGTGCAGTGTGGGGAGTCGTTTCCGAGCGATCAGATGTTGAAACACCATCTGATCCAGAGGCATATAGACGGCGCTGTTCCTAATACGTTTGACTGTAAAAATTGTATATTCCGGTTCTACAACGAGGCCGCTCTGCTGCGGCACGcgtgcggcgcgcgcgcggcgtgCGCGCAGTGCGGGGACACCTTCCCCGCTCCTCAGCTGCTGATCGATCACATCACCCTGAGGCATCACATCTTTAAATGCGAAGAGtGCTCGCGGCAGTTTACAAGCAAGCATTTCAAGATCCACTATCTTCTAAAGCACGCGGGTGGGGCGCGGGCCGGTGTGCGCGCGCGCAAGCGGGTCTCCGGCCAGCTCGAGAATCGGATTCGTAAATGGCGAGTGGTGGACGGCGAAACGATCAAGCAGGTAGAGAGTCAGCCGCGGCCCGAGCGCGAGCCTGCAGTCATGACGCACATGTGCGAGGTCTGCGGGAAGGGTTTCTTGAACTCGACGAAGCTGTCGATCCACAAGTGGCGCGTGCACGAGCCGCACGAGCACCGCTGCGCGCTCTGCCACAAGGCCTTCAAGACGAGGGAGGCGCTCGATATCCACACGCGAGTGCACACGGGCGAGCGTCCCTACCAGTGCTCAGAATGCCCGAAGGCGTTCAAACATCGTGGCGCATATACCAGGCACTATCTGATCCACTCGGGCCAGCGTAACCACGTGTGCACGATGTGCGAGAAGAGCTTCCAGACGTCGACCGGCGTCAAGATGCACATCCAGACCGCGCACATGAAAATGCCGTGGCCCGCCAAGCACAGGAGGGCCAGGGAGGTTATGCTACACGACTGA
Protein Sequence: MLNQPTCRCCLAVDGKLISLREVDAAQLYLNAVGVPVDPTDRFPQHVCIFCLRTLSRFVRFRARCHKVLDELYRALLLGVEVTTEYTQSLTSNFQELKPQYVQTKTHTLDVLGAGCVDELNTNPLDFPEAPIECKVEKEEKRESKDVVEELLKPKEEAPKDVVFVEKGNDTEYFDEIDDLDSFADDVIEVKNATKNSKKKIKEAKKLNTVTKPVKRKNKVRKKFKSNKRVMIDFAESIGFNLTELSLDEQIKEIEDKKKESGLICELCGKRFNNSNCLKRHKHCHVLKPKSFMCDLCSWVFKKKNTLIEHMLDHRYIFSCKSCDFKTKKRITLKAHHEFHQGKRYPCKYCDKVFEKVSSHFTHIRFKHESELPWCDLCGEGFIGEKGVISHKKLTHNILDEYPYTCACNKSFRSEAALDRHLIVKGCDLPSCVQCGESFPSDQMLKHHLIQRHIDGAVPNTFDCKNCIFRFYNEAALLRHACGARAACAQCGDTFPAPQLLIDHITLRHHIFKCEECSRQFTSKHFKIHYLLKHAGGARAGVRARKRVSGQLENRIRKWRVVDGETIKQVESQPRPEREPAVMTHMCEVCGKGFLNSTKLSIHKWRVHEPHEHRCALCHKAFKTREALDIHTRVHTGERPYQCSECPKAFKHRGAYTRHYLIHSGQRNHVCTMCEKSFQTSTGVKMHIQTAHMKMPWPAKHRRAREVMLHD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -