Eelu015780.2
Basic Information
- Insect
- Ephestia elutella
- Gene Symbol
- -
- Assembly
- GCA_018467065.1
- Location
- CM031574.1:8464697-8473867[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.13 14.3 1.3 1 23 140 163 140 163 0.98 2 12 0.00053 0.065 15.2 2.6 2 23 171 192 170 192 0.95 3 12 7.7 9.5e+02 2.1 2.6 1 23 196 219 196 219 0.81 4 12 0.0024 0.29 13.2 0.1 3 23 229 250 227 250 0.96 5 12 0.00065 0.079 15.0 2.1 2 23 253 275 252 275 0.94 6 12 9.9e-06 0.0012 20.7 1.0 2 23 282 303 281 303 0.97 7 12 0.76 93 5.3 1.7 2 22 313 333 312 336 0.90 8 12 0.76 93 5.3 1.7 2 22 350 370 349 373 0.90 9 12 2.3e-05 0.0028 19.5 2.1 1 23 379 402 379 402 0.94 10 12 0.00079 0.097 14.7 3.7 1 23 408 430 408 431 0.96 11 12 0.00024 0.03 16.3 1.5 1 23 439 461 439 461 0.96 12 12 0.0004 0.049 15.6 0.9 1 23 467 490 467 490 0.96
Sequence Information
- Coding Sequence
- ATGGAGATTTGCTATACCTGTCTCAGCAGAGATCGCATACTTTTTCCGCTTAGTCAATTCGAAAGTTTCTTTATAGAAACGAAAATGATAAATACAAAGTGCAATGAGTATATGATGGGGAACATATGTTGGGAATGTCAACACTTAGTGGAAAAATTTACGAAATTTAAAAAGCAAGTATTACAAGCTCAGAAACTGTTGGAAATGCGAAAGAAACCAGAAATTTCCGAAGACATATACGTAGAAACATTAGAAAAGAAGTCTGTTAATACAGTGAAAAGGAAAAGGGGGttggttaataataaaattaaaacagatGAGCTACAGGAGAAATTTACAATGGTGGTGTACACCAAGGAAGAAATGCTGAAGAACAGAGATGAGAAACGGAGCCAGCCTAATTTTAAGAAGATACCGTTTAAGTGTGATTTGTGTGTACTTGGCTTTACCAGGAAGGAAACGTATGAAGAGCATTTGAAGAAGAAACATAGTGAGAGCATAGGCCCCCTAGAATGCGACGTGTGCCATACACGCTTCGCATCGCAGAAAACGCTTTCCCGCCATCGCAGCCAGCACTATGTGTGTTACCGTTGCAAGTTCTGTCCGTACCAGACCTCGCAAATGTGGTCGGCGTTGAACCACTGTCGGGTGAAGCATGGTGCGGATACTAGTGGAAGTGTGCACTGTGGGCAGTGTGATGTGGTCGCCAGTACTCCAGAAGATTTAGCCGATCACATACGTACCCAACACAGCCTGCATTGTAACGAATGCGGGGAGAAATTCAAAGGGAAAAACACTCTTAGAAGTCACAAAATCCGCATCCACGGCTCAAAACGCGATATCAAATGCGACGTCTGCTCAAAAACGTTTAGCTCCCGGTCTAGATTGGAGAGTCACATGGTCCGACACAGCACAGCGTTAGCCACCAGACTATCTTACTGTTCACATTGCCGCGTGCAGTACAACAGTTTATATGTGTATAGGAACCATTTGAGGAACAGCGCACACCATGCTAATACCACCGCAGCATTGGCCACCCGACTATCTTACTGCTCGCATTGCCGCGTGCAGTACAATAGTTTGTATGTGTATAGGAACCATTTGAGGAACAGCGCACACCATGCTAATACTACATACCCGTGTCCGGAATGCAATAAGAAATTCACGTCCAAGGTGTACTGGACGAAACACTACAACTTCTATCATCTACACAAGTCTAAATACAAGTGTGAAGTTTGCAACAAGCTGTTCATATCGAACTGGCGCTTAAAGAACCACAAGCAGAAACACCACGGCCTGTCCCGGTCGCGAGACCACGCCTGCAATGAGTGCGGGAACAAATTTTATACATTGTCGACTCTCCGCGAGCACGAACTAACACACTCAGAGCAGCGCTCGTACATGTGTGAAGACTGTGGCGACACCTTCAAACAACGGCCGGCCTTGTACACGCACCATAGACTAGTGCACAGGGCCAAGACCTCGTGA
- Protein Sequence
- MEICYTCLSRDRILFPLSQFESFFIETKMINTKCNEYMMGNICWECQHLVEKFTKFKKQVLQAQKLLEMRKKPEISEDIYVETLEKKSVNTVKRKRGLVNNKIKTDELQEKFTMVVYTKEEMLKNRDEKRSQPNFKKIPFKCDLCVLGFTRKETYEEHLKKKHSESIGPLECDVCHTRFASQKTLSRHRSQHYVCYRCKFCPYQTSQMWSALNHCRVKHGADTSGSVHCGQCDVVASTPEDLADHIRTQHSLHCNECGEKFKGKNTLRSHKIRIHGSKRDIKCDVCSKTFSSRSRLESHMVRHSTALATRLSYCSHCRVQYNSLYVYRNHLRNSAHHANTTAALATRLSYCSHCRVQYNSLYVYRNHLRNSAHHANTTYPCPECNKKFTSKVYWTKHYNFYHLHKSKYKCEVCNKLFISNWRLKNHKQKHHGLSRSRDHACNECGNKFYTLSTLREHELTHSEQRSYMCEDCGDTFKQRPALYTHHRLVHRAKTS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -