Basic Information

Insect: Ephestia elutella
Gene Symbol: -
Assembly: GCA_018467065.1
Location: CM031593.1:2137074-2146719[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.6 9.3e+02 2.2 2.5 1 23 335 357 335 357 0.86

2 10 1.2e-05 0.0014 20.4 1.8 1 23 403 426 403 426 0.97

3 10 0.13 16 7.7 0.0 2 23 432 453 432 453 0.96

4 10 7.4e-06 0.00091 21.1 2.0 1 23 459 481 459 481 0.98

5 10 7.4e-06 0.00091 21.1 2.0 1 23 514 536 514 536 0.98

6 10 5.3e-05 0.0065 18.4 0.6 3 23 543 563 542 563 0.99

7 10 1.7e-06 0.00021 23.0 0.4 1 23 572 594 572 594 0.99

8 10 1.8e-05 0.0022 19.8 0.4 1 23 600 623 600 623 0.94

9 10 0.019 2.3 10.3 3.8 1 23 629 652 629 652 0.96

10 10 5 6.1e+02 2.7 6.9 1 23 660 683 660 683 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.6	9.3e+02	2.2	2.5	1	23	335	357	335	357	0.86
2	10	1.2e-05	0.0014	20.4	1.8	1	23	403	426	403	426	0.97
3	10	0.13	16	7.7	0.0	2	23	432	453	432	453	0.96
4	10	7.4e-06	0.00091	21.1	2.0	1	23	459	481	459	481	0.98
5	10	7.4e-06	0.00091	21.1	2.0	1	23	514	536	514	536	0.98
6	10	5.3e-05	0.0065	18.4	0.6	3	23	543	563	542	563	0.99
7	10	1.7e-06	0.00021	23.0	0.4	1	23	572	594	572	594	0.99
8	10	1.8e-05	0.0022	19.8	0.4	1	23	600	623	600	623	0.94
9	10	0.019	2.3	10.3	3.8	1	23	629	652	629	652	0.96
10	10	5	6.1e+02	2.7	6.9	1	23	660	683	660	683	0.94

Sequence Information

Coding Sequence: ATGATACACAACACAGGGCCCTACGGGCCAAACGAAGCTCCGATAAACAAGGGCGCACCTCTAAACATGACACATCTAAACGTACCTATGATTCCTCATAACTTgaataatataagtaaaatgCCTCAGCAGTCGCCACATCCGACTACAGGAAGTTACAATCTACCAAATTATCCACCATATGGGTACCAGTCCGTAAATATGAGCCATCAAATACCACCTTTTCCGAACTATCATTCCAATTTTTTACAAAGCAATTTCATAGGTCATTCGTCAAGTGCTATGGTCAATACGGGCTGGCAAAATGGTATGTTACCAATGAATTTGAATATACAAAACCATCAGCCGTCTAGCGCTTTGAATTTTGAACATTTTGATAAAAGACAAGacaatgaatataaaaataatgaaatatttcaaaaagtaccAATAAACATTCCTCAATTCCAAACTAAATCTTATCCAAAAGAAATTCCAGCCTTGGTTGATGTTAATTTTGACGAACATGAGTCCTGTAATAATAATTCTAAGAGTACTACAGAAAACAATTTAGATTTAGATGTAAAACATCCAGAAATATTAGAACATGATATTACTAGACGAAAAACATTAGAAAATACAATCAAATTGATTGAAAACATACTAGTTAATACAACCAAGAATAGGGAACAAGAGTTGTGTAAGGAAAATAGTGTAAAAAAGGCAACAGAAAGTGAAAATCATGAAAAGAAAGAGATGGAACTAAAAGACCAGGATGTGTGCAATAAATCAGCATCAGAAGAGGATGAATCAGATGCAGAAGAAGATATAAAGCCAAATGTAAATAATGAAAACTTAAATATATCAATTAAAGTTGAACCTCTAATAGAGGTAGACAGTATATTTCTTCGTGATAAAAACAGAGTTTCCGGAGATGTCAAAGACTGTGCGATTATTGAAAGCGACACTAGTGTTTCGGAAGCGACAGACGCTGTCAAAAATGGTACATCATTGAATGTGGTCTACGAATGCCCACATTGTAAACTGTTAATACAGCATCCGAAGAGGTTCCTCATCCACACAAAATGGCATATGTTTGGGCTGGCACGGTGCAAACGTGTAGAACTGGCCAGAGTGAAGTCTGAAAGACGTATACAATTACGGGAAGAGAGAGACAGGTTGAATTCCAGCCAGCTAACGAGCGAGGACATCGAGAAAGGGACAGCGTTCTCGTGTAAGGACTGTGATAAGTTATTCGGATCAAAGAGCAGCTTGAAGAATCATAGACAGAGAGTGCATCCCACGAGGTCTAGAGAGTGTAAGATATGCAAGAAGACAGTGCTAGGATGGATGGCACTCCGGGCTCACATAGCGAGTCACACTGGTGACTCCGGGTACCAGTGCGCTGATTGCCCCAAGAGGTTCAAATATGCTCACTCGCTTGCTAAACACAGGGACACGCATTTGTCCGACCATCCAAGATCAAGAGAATGCAAGAAGACAGTGCTAGGATGGATGGCACTCCGGGCTCACGTAGCGAGTCACACCAGGGACTCCGGGTACCAGTGCGCTGATTGCCCCAAGAGGTTCAAATATGCGCATTCGCTTGCCAAACACAGGGACACGCATTTGGAAAAGACCCATGGTTGCGATCAATGCTCGAAGATGTTTGGTTCTCAAGCGTTACTGAAGATGCATATGAAGACTCACGCGCGAGCGCAGCGAGGGACCACCTTCAGGTGCACTTACTGCGGAAAGGGGTTCTACGAGGCTTGGAACCTGCAGGTCCACGAACGAACACATAGGAACGAGCGGCCGTTTTTGTGCGAGATCTGCAACACTGCGTTCGGGACCAATTCAAGTCTCAAGAGACACGTCAAAGTTTCGCACAGTTCGTCAAAGCCGCACGAGTGCCCCACCTGCCACCGCTGCTTTATGTCGGCCGTCATACTGGAAAGACACGAGCGGCGAATACATGGTGATCCTGAGGATTTCAAGTTTCATTGCAAACAGTGCACTTGCAGATATCTGACATCGAAAGACCTGCAGAAACACGTATACAAGGTCCATCCTAAAAGCAAACGGAAGAGGAAATCTGAGAGCGACAGCGATTGA
Protein Sequence: MIHNTGPYGPNEAPINKGAPLNMTHLNVPMIPHNLNNISKMPQQSPHPTTGSYNLPNYPPYGYQSVNMSHQIPPFPNYHSNFLQSNFIGHSSSAMVNTGWQNGMLPMNLNIQNHQPSSALNFEHFDKRQDNEYKNNEIFQKVPINIPQFQTKSYPKEIPALVDVNFDEHESCNNNSKSTTENNLDLDVKHPEILEHDITRRKTLENTIKLIENILVNTTKNREQELCKENSVKKATESENHEKKEMELKDQDVCNKSASEEDESDAEEDIKPNVNNENLNISIKVEPLIEVDSIFLRDKNRVSGDVKDCAIIESDTSVSEATDAVKNGTSLNVVYECPHCKLLIQHPKRFLIHTKWHMFGLARCKRVELARVKSERRIQLREERDRLNSSQLTSEDIEKGTAFSCKDCDKLFGSKSSLKNHRQRVHPTRSRECKICKKTVLGWMALRAHIASHTGDSGYQCADCPKRFKYAHSLAKHRDTHLSDHPRSRECKKTVLGWMALRAHVASHTRDSGYQCADCPKRFKYAHSLAKHRDTHLEKTHGCDQCSKMFGSQALLKMHMKTHARAQRGTTFRCTYCGKGFYEAWNLQVHERTHRNERPFLCEICNTAFGTNSSLKRHVKVSHSSSKPHECPTCHRCFMSAVILERHERRIHGDPEDFKFHCKQCTCRYLTSKDLQKHVYKVHPKSKRKRKSESDSD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -