Eelu015341.2
Basic Information
- Insect
- Ephestia elutella
- Gene Symbol
- -
- Assembly
- GCA_018467065.1
- Location
- CM031574.1:6082543-6097405[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00064 0.079 15.0 3.4 1 23 260 283 260 283 0.95 2 12 0.019 2.4 10.3 0.8 2 23 292 314 291 314 0.90 3 12 0.022 2.7 10.1 1.0 1 23 318 341 318 341 0.94 4 12 0.16 20 7.4 0.7 1 23 345 368 345 368 0.96 5 12 4.9e-06 0.0006 21.6 2.4 2 23 372 393 371 394 0.94 6 12 0.00018 0.022 16.7 2.5 2 23 398 420 398 420 0.96 7 12 0.024 3 10.0 0.4 3 20 435 452 434 454 0.93 8 12 0.024 3 10.0 0.4 3 20 491 508 490 510 0.93 9 12 9.7e-05 0.012 17.6 0.1 2 23 523 545 522 545 0.95 10 12 0.029 3.5 9.8 6.6 1 21 551 571 551 574 0.93 11 12 0.00032 0.04 15.9 0.4 3 23 585 605 584 605 0.99 12 12 0.00011 0.014 17.4 0.3 1 23 611 634 611 634 0.98
Sequence Information
- Coding Sequence
- ATGTATTCAGTGAAAGTTAAATTGGACAACAATAATGTTTGCTTTGGCTGCTTAAGTTCCGACCGTCAATTAACGCTCTTGAAGAATCATGTGGCTCTATTCTACAAGTTGCTGGAACACCAACAAGTTTgtaaCACCAAAATATTGCTCTGCTGGGAATGCAGTGCCATCTTGGACAAGATATGGACTTTTCAAAAACGAATTCAACGGGCCCAGTTAATACTTCAACAAACATTTGTAACAATGCATGAATCATGGGAAAAATTATCGACATTATCTACAACAAGAAAGGATTCCTATGATCACATGCTATGGTACGATGAGAAATCACAACAATGTAACAAAGAATCAGTTTACGAAGTACCATTAGAGTTACCAGATATCATCGAAGAAAATGTTAACAACGAAAACACAGATATGAATGTCAAAGAAGAACTAGTTGATGATATATTCGACGACTTTAAACTTGAAAATGATAATAGCACAGATATAGATAATGAGTCTAATGCTAATTACGAAACCCTAGAAGACATTATGAAGAATGATGATAATAAGAGTAACGATGAAGAATTTGATGAAGATTACAaaccatttattaaaaaaccaGTCTTGAAAAGTATTTATGAACGATATATGGATAAAGTTACAATCATAGATGCTAATGAGGAGGATTTTCGACAATATTGCGTACGGGTTACATTGAATGAAAAAGAAATAGATGAATTGTTGGATAAGGAACAGAGTGAATGGAGGCGAGGCATTAGACACGACTTACCACACAAGTGTAAAGATTGTAATAAAGGTTACAGGAAAGAAGTAGACTATAGGAGACATATTATGTTCAATCATAtgaatCGTACAAACAGATACATGGTATGTAAACAATGCAAGAAATCTTGCTCCTCATGGCCACTGATGGAGGACCATTGGGCGCAGTACCACAACAAATACTACAGGTGTACTATATGTGGGTTCACATCGCCAAGGAGCACGTGTGTAGTGACGCACATTACTAACGCACACGTCAAGAGATATCAGTGTAATGTGTGTAATGAACAGTTGGGCTCTATGAAGGAGTTCCGGGGTCATTACAGAGAGAAGCACGAGCGACTGATCTGCGACGACTGCGGGAAGAGCTTCGTCAAGAAACGCTCGCTCGAAACTCACTATAAACGCCACCACCTACCGCCTACATGCGAAGTTTGCAACAAAACCTACTCCACATACCACAACCTCGACAACCATTACCGCCTCAACCACCCGGAGTTCATCAATTGCGAGAATAGGCAGGAGCTTGCTTATTGCGTGGAGTGCAATAAGCAGTTCCCAAGCGTATACAAGTACAGACGGCATCTGACTAATGCGGCCGTTCATACCCCGCCTAAGGTGGAAATccgtaaaagcgACAACCACTACCGCCTCAACCACCCGGAATTCATCAATTGCGAGAATAGGCAGGAGCTTGCTTATTGCGTGGAGTGCAATAAGCAGTTCCCAAGCGTATACAAGTACAGGCGGCATCTGACTAATGCGGCCGTTCATACTCCGCCTAAGGTTGAAATCGTACCGTGCCCGGAATGCGGCAAGATATTTTCGAGAAAGATCCGTATGACGAACCACGTGATGTCCGTGCACAGAAAAAACACAAAACACAGATGCGACATTTGTAATAAGACATTCTGTTCCGCGTACTCGGCGAAAACTCACAGGCAATGTGTACATGAAAAGGTGCAGATGCCAAAGAACAAGCTATGTGATATATGTGGCAGAGGATTTAGTACAAACCGCATCCTGGCCAATCACCGTCGCACGCACACAGGCGAGCGGCCCTACCCGTGTCCGCACTGCCCCGCCTCCTTCGCGCAGCGGGTCGCCATGCGAACTCATGCCAAAACACAACACAAGAACTTGATTGTAGGCGCCAATCAGATCAATGACAATGGAATTACGACGTGA
- Protein Sequence
- MYSVKVKLDNNNVCFGCLSSDRQLTLLKNHVALFYKLLEHQQVCNTKILLCWECSAILDKIWTFQKRIQRAQLILQQTFVTMHESWEKLSTLSTTRKDSYDHMLWYDEKSQQCNKESVYEVPLELPDIIEENVNNENTDMNVKEELVDDIFDDFKLENDNSTDIDNESNANYETLEDIMKNDDNKSNDEEFDEDYKPFIKKPVLKSIYERYMDKVTIIDANEEDFRQYCVRVTLNEKEIDELLDKEQSEWRRGIRHDLPHKCKDCNKGYRKEVDYRRHIMFNHMNRTNRYMVCKQCKKSCSSWPLMEDHWAQYHNKYYRCTICGFTSPRSTCVVTHITNAHVKRYQCNVCNEQLGSMKEFRGHYREKHERLICDDCGKSFVKKRSLETHYKRHHLPPTCEVCNKTYSTYHNLDNHYRLNHPEFINCENRQELAYCVECNKQFPSVYKYRRHLTNAAVHTPPKVEIRKSDNHYRLNHPEFINCENRQELAYCVECNKQFPSVYKYRRHLTNAAVHTPPKVEIVPCPECGKIFSRKIRMTNHVMSVHRKNTKHRCDICNKTFCSAYSAKTHRQCVHEKVQMPKNKLCDICGRGFSTNRILANHRRTHTGERPYPCPHCPASFAQRVAMRTHAKTQHKNLIVGANQINDNGITT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -