Eelu002871.1
Basic Information
- Insect
- Ephestia elutella
- Gene Symbol
- -
- Assembly
- GCA_018467065.1
- Location
- CM031566.1:7479219-7495114[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.18 22 7.3 0.7 2 20 6 25 5 27 0.88 2 13 7.7 9.4e+02 2.1 0.1 3 20 34 51 32 53 0.89 3 13 0.59 72 5.6 0.3 1 12 204 215 204 224 0.83 4 13 1.4e-05 0.0018 20.2 0.8 1 23 369 391 369 391 0.98 5 13 0.0018 0.22 13.6 0.7 2 23 397 418 396 418 0.97 6 13 0.84 1e+02 5.2 3.5 1 23 428 450 428 450 0.98 7 13 0.00012 0.015 17.3 0.6 3 23 508 528 506 528 0.96 8 13 0.00072 0.089 14.8 1.7 1 23 544 566 544 566 0.98 9 13 1.9e-06 0.00023 22.9 4.5 1 23 572 594 572 594 0.98 10 13 0.00069 0.085 14.9 5.2 1 23 600 622 600 622 0.97 11 13 0.00022 0.027 16.4 1.7 1 21 628 648 628 650 0.93 12 13 7e-05 0.0086 18.0 0.9 1 23 654 676 654 676 0.98 13 13 0.00042 0.052 15.5 0.1 1 23 684 707 684 707 0.96
Sequence Information
- Coding Sequence
- ATGGGAGATGTATTGAAATGCCCCCTATGTTGTGATAAAACCTTTGAGTCTAAGTTATCACTTCTTCAACATTTAACAGGTCTTCTTTCGAACATAAACTGCCCTGTTTGTGATAACAAATGGTCTTCTATAACTCATCTCATTGAACACCTCTCACTGGACAATTGTCGGCGTGATAGCTCGACTCAATCATTCGATGTCCAAACTTCAGAAAACAGTCAGAATGATACTGATATTAAACCATTTATTTCTAGTAATCAAACACTTGGAAATGAAAATCAGAAGGACCTTTTTCCCCAACTGGCCAATAAAGAGACGGTTGAAAGCATTGGCTCCAATAATGGTGACAAAACCTATACAGTAATACTTGGCAAACATGTAACGAAAACACACCCACAGCCtcaagaaataaagtttattgaGGATAATGGGCAGAGCCAATATGTGTTTATGGATGAAATGGACTCTGACTTAGACAGTGATAATGTTGTCACTAAACAGAATAATGATGGGACTATATCAATGACTACTGTCAGAGaTTTAAAAACAGATACAGATTCCACGATGGTTCCATCTCAGGATGTTCTAGAAGACAATCGAGGAGAGTTGTACAGTTGCAATTCATGTGGAGTCTCCTTCTCATCTGTCATTGAACATATACAGAACTACCACAACGACCAAGAAGTGGTGGTCGAgGAACCTGTAGATGATGTATATAATGAAGTGCCAATCGAACATGACCCAATGATGACGGAAGGTAGCTTGAACAATACTAACTTCACGCCTCGGCGCATGATCACAGAGACGGGCGATATAGTTGAAGCTCCTATCACAATGAAATCTACAGTAATATCTGACAAGATAAAAGAAGAGAAGCCTGCCCGAGGCCCGGCGAAGCGGTACGTCCAAGTGGAAAAGTTCTGTGATAGTATTATTAAAGATATCAAGCCAAGAAAAGATAAAGATGAACCATTTCACAGAGCTGTAGTGAAAGACATGGAGACGACAAACGGCACGAAAGTGAAAATGTATCAATGCATCGTGTGTAATGTTTATGTCACAGCACTATCAGATCTGAAACTTCAGCCGTGCAAAGCCTtgaaATACCCATGCCCACATTGTCCTGTGGCGTACGAAAACTCAAAGTCACTGTGTGCTCACATGAAAATACACAAAGTTCCTAAAGTAAAGTGTCCACACTGTGATTTGATATACGATAACGCAAAGGCACTGTGTGAGCACGCGAAAATACACGAGGGGCAGAAAAGTGCCGAGGCTACGTACAACTGTGAGGTCTGCTGCACAGTGTTCCTGACGAACAAATCGTTGAAACTGCACAAGAGAATGCACGATCCGGTCAAgACTCGACCCATAGACCCTCCAGTCAAATGTCAACAAGACGGAACCACAGACGAGACTATGGAAGACGAGCGATACCTCTGCAACGTCTGCCATAAAATGATCCCAATAGACTATCGCACGATACACCAGCATTCACACAAAACTGACAATAATATGAACTGCACCGTGTGTAATAAGAAGTTCCAGTCGGAAGAGTATTTGGAGATGCATATGAGGGCCCACAATATGCACAAGGTTCCTGAGAACAAGACAGACAAATCCCTCCCGTACAGCTGTGTGTACTGTCCCAGGCAATTCTCGAGACCGCACGAAAAAGTCAAGCACGAAAGGATACACACagGAGAAAAGCCGCACAGTTGCGAGATCTGCGGCAAGAGTTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACGCACACCGGCGCGCGGCCCTACGCCTGTCCGCACTGCGGCAAGCGGTTTAAAGCACATAGCGTGTACAATCACCACCTCCTGACGCACTCAGAGAAGCGAGCGTACAAGTGTCCGATGTGTCCGAAAGCGTTCAAGACTTCGGTACAACTCGCCGGGCACAAGAAATGTCACACAAAGCCATTTTCCTGCCAACACTGTAACAGGCCTTTCGCATCTCTATACGCCGTACGTGTCCACATGGAAACGCACGGCCGTCAGAACAATCTCAAATTCACGTGTCCTTTATGCGGCGCGCGGTACGCGAGAGCGTTCGCGTTGAAGGACCATGTGAAACAGGCACATCAGTTGGACGGGGACTCTTTGGAGAAGCTGCAACCCGACGGCGATAAAGACTGGGTAGTTCTCGACGAGGGCGCAAACACAGAAACCATTCAAATAGAAGTGGACAGTATAAAGTCCGCGATCGAAGAAGTAGATATACCAACATCGAAAGATAATTCCTTGATTACAATCCTCGACATGAATGCTGAAGAGATGATAGTcccataa
- Protein Sequence
- MGDVLKCPLCCDKTFESKLSLLQHLTGLLSNINCPVCDNKWSSITHLIEHLSLDNCRRDSSTQSFDVQTSENSQNDTDIKPFISSNQTLGNENQKDLFPQLANKETVESIGSNNGDKTYTVILGKHVTKTHPQPQEIKFIEDNGQSQYVFMDEMDSDLDSDNVVTKQNNDGTISMTTVRDLKTDTDSTMVPSQDVLEDNRGELYSCNSCGVSFSSVIEHIQNYHNDQEVVVEEPVDDVYNEVPIEHDPMMTEGSLNNTNFTPRRMITETGDIVEAPITMKSTVISDKIKEEKPARGPAKRYVQVEKFCDSIIKDIKPRKDKDEPFHRAVVKDMETTNGTKVKMYQCIVCNVYVTALSDLKLQPCKALKYPCPHCPVAYENSKSLCAHMKIHKVPKVKCPHCDLIYDNAKALCEHAKIHEGQKSAEATYNCEVCCTVFLTNKSLKLHKRMHDPVKTRPIDPPVKCQQDGTTDETMEDERYLCNVCHKMIPIDYRTIHQHSHKTDNNMNCTVCNKKFQSEEYLEMHMRAHNMHKVPENKTDKSLPYSCVYCPRQFSRPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEKRAYKCPMCPKAFKTSVQLAGHKKCHTKPFSCQHCNRPFASLYAVRVHMETHGRQNNLKFTCPLCGARYARAFALKDHVKQAHQLDGDSLEKLQPDGDKDWVVLDEGANTETIQIEVDSIKSAIEEVDIPTSKDNSLITILDMNAEEMIVP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220869;
- 90% Identity
- -
- 80% Identity
- -