Eelu032204.1
Basic Information
- Insect
- Ephestia elutella
- Gene Symbol
- Glis2_1
- Assembly
- GCA_018467065.1
- Location
- CM031584.1:15001579-15031718[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.093 11 8.2 0.3 2 23 96 119 95 119 0.94 2 29 0.063 7.8 8.7 0.5 1 23 134 158 134 158 0.95 3 29 1 1.2e+02 4.9 0.1 3 23 231 253 229 253 0.92 4 29 0.021 2.6 10.2 1.5 3 22 261 280 259 284 0.92 5 29 0.021 2.6 10.2 1.5 3 22 292 311 290 315 0.92 6 29 0.021 2.6 10.2 1.5 3 22 323 342 321 346 0.92 7 29 0.021 2.6 10.2 1.5 3 22 354 373 352 377 0.92 8 29 0.021 2.6 10.2 1.5 3 22 385 404 383 408 0.92 9 29 0.021 2.6 10.2 1.5 3 22 416 435 414 439 0.92 10 29 0.021 2.6 10.2 1.5 3 22 447 466 445 470 0.92 11 29 0.021 2.6 10.2 1.5 3 22 478 497 476 501 0.92 12 29 0.021 2.6 10.2 1.5 3 22 509 528 507 532 0.92 13 29 0.021 2.6 10.2 1.5 3 22 540 559 538 563 0.92 14 29 0.021 2.6 10.2 1.5 3 22 571 590 569 594 0.92 15 29 0.021 2.6 10.2 1.5 3 22 602 621 600 625 0.92 16 29 0.021 2.6 10.2 1.5 3 22 633 652 631 656 0.92 17 29 0.021 2.6 10.2 1.5 3 22 664 683 662 687 0.92 18 29 0.021 2.6 10.2 1.5 3 22 695 714 693 718 0.92 19 29 0.021 2.6 10.2 1.5 3 22 726 745 724 749 0.92 20 29 0.013 1.5 10.9 0.5 3 22 757 776 755 776 0.94 21 29 0.22 27 7.0 0.0 1 23 818 841 818 841 0.96 22 29 0.22 27 7.0 0.0 1 23 868 891 868 891 0.96 23 29 0.22 27 7.0 0.0 1 23 918 941 918 941 0.96 24 29 0.22 27 7.0 0.0 1 23 968 991 968 991 0.96 25 29 0.22 27 7.0 0.0 1 23 1018 1041 1018 1041 0.96 26 29 0.22 27 7.0 0.0 1 23 1068 1091 1068 1091 0.96 27 29 0.22 27 7.0 0.0 1 23 1118 1141 1118 1141 0.96 28 29 0.0034 0.42 12.7 1.9 1 23 1150 1172 1150 1172 0.97 29 29 0.15 18 7.5 0.8 1 23 1206 1233 1206 1233 0.95
Sequence Information
- Coding Sequence
- ATGGAGGGAAAATCGGAAATAGAAGAGAAACCAAAAATTACAAATGTCCAAAAAACTAAACTCGCCCGTTGTGTTAGCTGGCTGCAATATCAAAACAGTCTTGAGTCAAAAACTGTGCAGAATAAGAATGACATAGAATTTATCATAAGGACGAATGCAGAGCGAAAAAAGTTTCTGTTATCCGCTGTCGATGATGACGCTACTTTGCCCGCTGGTGTTGAAGAGCCAGCAGTGGAGCCTAAAGCAGTGcCTAGACTGAAGCTGCGTATTGATAAGTTGCATATGGAGTGCGAGTGGCAAGGGTGTGGTAGCTTCTTTGAAAATTATGACCGATTTCAGTCACACATTCGACAGCATGGTTCAGATTTACATGTGATTGGTACAGAAGATAGTGTGGAATATGTATGCCTGTGGGATGTTTGCGGCCACAAAACATCCGATTTTGAGGAGATGGTCCGACACATGAACTACCACGCTTACCACGCACATCTGATGGCGATCGGCTTCAATGGCCGTGCAACTTTGAATCTAGATCGCTGCCGAAAAGACTCCAGCAAGAGGAACCAACTGCCACCATTGAAATGTCCTCATGCTTGTTTGTGGTTTGGGTGTGAGGATTCTTTTGATTCTATACAGGGATTGTTCGACCACGTACAATGCGCGCACATCAGATACTCAGAAGATTTCCTATGCTCGTGGGCGGGCTGCGGCGCGACGTTCCTGAAGCGGAACCCGCTGCGCGTGCACGTGCGCTCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCATTTCGCCAACAATAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCATTTCGCCAACAATAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAcgctCGCACACCGGCGAGCGCGTCATCGCCTGCTACCACTGCGGGCTGCACTTCGCCAACAACAGGAAGCTGGCCGACCACGTGCGGAGACAAAACGTGAACCCGAATACGGAGTTCGCGTGCTCTGTATGCGAGTTTGCGTGCTCAGTATGCGGCAAGCTGCACGCGACCGAGTATCTCCTGCGCTGCCACGCGCGCCAGCACATCTCGGCGTACGCGTGCGCCATGTGCGACATGTCTGCGCCGACGACCGCGGCGCTGGCGCAGCACGTGCGCTACCGGCACATCGACGACCAGTACAGCCGCGTGCACGCCTGTCCGCACTGCGAGTACAAGTACGTCGCTATTGGTACACATCTCACGTACGCGTGCGCCATGTGCGACATGTCTGCGCCGACGACCGCGGCGCTGGCGCAGCACGTGCGCTACCGGCACATCGACGACCAGTACAGCCGCGTGCACGCCTGTCCGCACTGCGAGTACAAGTACGTCGCTATTGGTACACATCTCACGTACGCGTGCGCCATGTGCGACATGTCGGCGCCGACGACCGCGGCGCTGGCGCAGCACGTGCGCTACCGGCACATCGACGACCAGTACAGCCGCGTGCACGCCTGTCCGCACTGCGAGTACAAGTACGTCGCTATTGGTACACATCTCACGTACGCGTGCGCCATGTGCGACATGTCGGCGCCGACGACCGCGGCGCTGGCGCAGCACGTGCGCTACCGGCACATCGACGACCAGTACAGCCGCGTGCACGCCTGTCCGCACTGCGAGTACAAGTACGTCGCTATTGGTACACATCTCACGTACGCGTGCGCCATGTGCGACATGTCGGCGCCGACGACCGCGGCGCTGGCGCAGCACGTGCGCTACCGGCACATCGACGACCAGTACAGCCGCGTGCACGCCTGTCCGCACTGCGAGTACAAGTACGTCGCTATTGGTACACATCTCACGTACGCGTGCGCCATGTGCGACATGTCGGCGCCGACGACCGCGGCGCTGGCGCAGCACGTGCGCTACCGGCACATCGACGACCAGTACAGCCGCGTGCACGCCTGTCCGCACTGCGAGTACAAGTACGTCGCTATTGGTACACATCTCACGTACGCGTGCGCCATGTGCGACATGTCGGCGCCGACGACCGCGGCGCTGGCGCAGCACGTGCGCTACCGGCACATCGACGACCAGTACAGCCGCGTGCACGCCTGTCCGCACTGCGAGTACAAAGGAGTAATGAAATGGGATTTGAAAATGCATATGAGAACGCACACACGCAAAAGGCGACGCAAAGGCAAGTCGGATCCCGATGAATCTGTGTCAGATGACTCCGAAGAAGAACGGAGAAAAAAGCCCAAAGTCCAGAAGAAATATGCTTGTCACATGTGCCCGGAGGAGAACATGAAGACTTTTACTAGAGGCGAGAGACTGACGAGGCATTTGGTGAAGTTGCACGGGGCTCAGTGGCCCTTTGGACACAGTCGGTTCAGatACCAAATAAGCGAAGACGGGATGTACAGACTGACGACCACTCGCTACGAGTTTCTCGACGTATCTGAGAAAATCGTGGACGGCAGCGTTCCGAAGGAATCGCCGCAAAACAAACTGGAGTTCAAAGTCAAGgaaatcgCTGAAGCAACCCAAACGACGCCGAAACATTTCAAAATAACGCTCAAACAAGAGAAGAGCGACAGTGAAAGCGAAAACAGCGAATGTGAGCAGAAAATGAAAATTGAACCTAATGTTGATAAGAATGCGGTCGAAATTACAATGTGCGATGTCGACGAAGAGGGAAACATTATTAGTTCTAAAGTCATAGACCATTTGTATCCTGGCCTTAAGACGGAATAA
- Protein Sequence
- MEGKSEIEEKPKITNVQKTKLARCVSWLQYQNSLESKTVQNKNDIEFIIRTNAERKKFLLSAVDDDATLPAGVEEPAVEPKAVPRLKLRIDKLHMECEWQGCGSFFENYDRFQSHIRQHGSDLHVIGTEDSVEYVCLWDVCGHKTSDFEEMVRHMNYHAYHAHLMAIGFNGRATLNLDRCRKDSSKRNQLPPLKCPHACLWFGCEDSFDSIQGLFDHVQCAHIRYSEDFLCSWAGCGATFLKRNPLRVHVRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQRSHTGERVIACYHCGLHFANNRKLADHVRRQNVNPNTEFACSVCEFACSVCGKLHATEYLLRCHARQHISAYACAMCDMSAPTTAALAQHVRYRHIDDQYSRVHACPHCEYKYVAIGTHLTYACAMCDMSAPTTAALAQHVRYRHIDDQYSRVHACPHCEYKYVAIGTHLTYACAMCDMSAPTTAALAQHVRYRHIDDQYSRVHACPHCEYKYVAIGTHLTYACAMCDMSAPTTAALAQHVRYRHIDDQYSRVHACPHCEYKYVAIGTHLTYACAMCDMSAPTTAALAQHVRYRHIDDQYSRVHACPHCEYKYVAIGTHLTYACAMCDMSAPTTAALAQHVRYRHIDDQYSRVHACPHCEYKYVAIGTHLTYACAMCDMSAPTTAALAQHVRYRHIDDQYSRVHACPHCEYKGVMKWDLKMHMRTHTRKRRRKGKSDPDESVSDDSEEERRKKPKVQKKYACHMCPEENMKTFTRGERLTRHLVKLHGAQWPFGHSRFRYQISEDGMYRLTTTRYEFLDVSEKIVDGSVPKESPQNKLEFKVKEIAEATQTTPKHFKITLKQEKSDSESENSECEQKMKIEPNVDKNAVEITMCDVDEEGNIISSKVIDHLYPGLKTE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -