Eelu036226.2
Basic Information
- Insect
- Ephestia elutella
- Gene Symbol
- -
- Assembly
- GCA_018467065.1
- Location
- CM031587.1:6562203-6572200[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0043 0.53 12.4 2.0 1 23 237 260 237 260 0.92 2 19 0.85 1e+02 5.2 0.0 2 23 286 308 285 308 0.95 3 19 0.0056 0.69 12.0 0.9 1 23 329 351 329 351 0.98 4 19 0.071 8.7 8.5 1.7 1 23 355 377 355 377 0.85 5 19 8.1 1e+03 2.1 2.8 2 23 410 432 409 432 0.91 6 19 0.00034 0.042 15.8 0.2 1 23 439 462 439 462 0.96 7 19 0.002 0.24 13.4 4.8 1 23 468 490 468 490 0.97 8 19 0.00013 0.016 17.1 2.9 1 23 496 518 496 518 0.98 9 19 0.93 1.1e+02 5.0 0.8 2 23 530 552 529 552 0.93 10 19 0.018 2.2 10.5 2.1 2 21 559 578 558 579 0.93 11 19 0.038 4.7 9.4 0.5 1 23 636 659 636 659 0.90 12 19 0.025 3.1 10.0 0.0 3 23 688 709 686 709 0.94 13 19 0.062 7.7 8.7 0.3 3 23 733 755 731 755 0.95 14 19 0.0015 0.19 13.8 0.5 3 20 762 779 760 783 0.90 15 19 0.049 6 9.0 0.3 1 23 788 811 788 811 0.96 16 19 0.00054 0.066 15.2 0.2 2 23 817 839 817 839 0.94 17 19 4.1e-05 0.005 18.7 4.7 1 23 843 866 843 866 0.98 18 19 0.00064 0.079 15.0 0.4 2 23 873 894 872 894 0.96 19 19 0.13 16 7.7 4.8 1 23 900 922 900 922 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTTGACGAGATAGTCGTTAAGGAGAGCCCGGGGCTATGCCGGTGTTGTCTTTCAGAGGGTTGTTACAAAGACATGGGAACCGAGTATAATTGGATGAATGAAAATGAAGTTTACGCCGATATGTTGTTAGAATGCTTCGATATTTCTGTTTCCCAACACAATGAAGGTCCAAACGGGCCCAACCGTCTTATTTGTGAAGTCTGCATAACAAGGCTGCGGGATGCGTGCAACTTCAAGAAGCAAGTCTTGGACTCGGAGAAGAAATTTGTTGATATGATTGGCAGGGGAGACTTTGGGCCAAAAGTGCTAATCTACCCATCTCAAATGAAGTCGGAGGCTGAAGACCCAACAGTCAACGAAGTGGAATACTTGGATGATGATGACATGGATTTTAGCGATgACTTGCCACTGAAGCCCCGTGAAGAACCAAGCATATCAGACATCACAGTCTCCTCTCTCCCGATAAAGAATAAGCGGGGAAGGCCGAAGAAAGCGGTCGTTAAAACGGAGAAGAAGGCGAAGATTGCCAAGCTGGAGGAGAAGGCGAAGTCGTCCAAAGCTGTTGTTAAAGGTGACAATGGGTCAGAGGCATCGAGTAAGTCCTCGATTTCGTCAACCAAACGCAACAGACTCATTAAGAGAAACGCTATACTCGTTCTAGAAGGTTCCACAGCAGTACCCTTCAAATGGCACCGACAGGATTACCTATGCTTCTTCTGCCATAAGCCTTTTAAAGACTCAGAATTGCTCAAAGGTCACACCAAAGGTGAACATGGCAAAACTAATATCAAAACAGCTGTGGCGTATATGAGAAGAGACGAAAAAGTTAAGATCGACGTAACAGAATTGTCTTGTAAATTATGCGATAATAACATTGAAGATCTGAACGAATTAATAGATCATTTAAAAGTGGTTCACAAGCAATCTTTTGCGGAATTTGGATATGGTTTGATACCTTACAGATTGAAGAAAGATAATTTCCAATGTGCGATTTGTGATGAGAACTATCAATATTTCACTAAACTTAATCAGCACATGAATGACCATTACGGAGATTATATTTGCGATATTTGTGGCAAGTCCTTTCTTAGTCAGGATAGGCTGAGATGTCATTCGATGAGTCATGGATCTTTTAAGTGTGTCTCGTGTACGGAAACTTTCGATTCGCTAACTAGGAAGAATAATCACGATTTTCAAGTACACAACAGAGACAGAAAAGTGAAGTGTTGCTACTGTAGTGAGACGTTTTTGAATTACATGCAAAGGAAGAAACATTACGCGTCAGCGCATAATGTAGCGACAGCGGAGTATAAATGTCCTGTGTGTGGTAAAGTGTTTCAAATTATGAGCAAAATGAAGGTACATTTGAAAGAGGTACACATGAAAGAAAAGCGGTTTTCATGTACGTTGTGTGATCAGAAGTTTTTCTCTAAAACACACGTTCAGAAACATATGGTGAAGCATTTTGGCGAAAGGGTGTATCATTGTAATATTTGCATGAAGTCGTATGCCAGGAAGCAGACTTTGAGAGACCATATGCGGATACATGATAATGATAAAAGAAACAATAGGCATCTTACGAGCTGTCATTTATGCCAGTTGAAATTATCATCGGCTGCTCTGAAGCAGAAACATATCGAATTGGAGCATCCTGATGATGGTTCACTGCAATGTGACAATTGTTCTAAAGAGTTTCACACGAAACAAGGTCTCAAAATGCATACTAAAAAGTGTAAAGCCGAAGAACTATTTGAAAATGTTAAAGAAGAAAGCTTCGATATCGATTTAGATGAAAATTACGAAGAAGTCAAAGGACCCAGCGTCAAGCAAATTCGCGAGAATATAGTTACAATTATAAACATGTCTACAGCTATACCTTTTAATTTCTACAAGAATAAATTCAACTGTTTCTATTGCTCTCAAGATTTCGCTGATTCCGATTCAATGAGAGAGCACACAGTTTTGGAACATCCAATTTGTGACATAAacgaaaaatgtattaaaaagtGTAGAGAAACAGTAGCGTGCGTCAAAATTGATGTGTCCACTCTAGCCTGTAAAGTCTGTTTCGAATCTGTGAATGATTTGGACAACCTTATAGATCATCTGATAGTAAAACACGAGGCTAATTACGATAAAAGTATTACTACATGTTTGCAGCCGTATAGGCTGTCTAAAGACCACATGGCTTGTCCGAATTGTCCAGAAGAGGTGTTCCGATTCTTCGGAACACTTTTGAAACACATGAACAAGAAGCATACgaataataacataatatgcGTTTACTGTGGGCAGATGTTCAGGCGGGATCAGAATTTAAGAGTGCATATTTGGCGCCATCATCGAGATGGCAGATTCAACTGTAATATTTGTGGAGCGGAGTGTAATATACCTTCGAGGTTATACATGCACATGGCGAAAGCCCATGGGGTGAAAGCAGCAAAGTGCCCTAAATGCCCAGAATCTTTCGCCACTCAGTATTTAAGGCAAAAGCATTTGATCGAAGCCCACGATTCAGGCCACAAATGCAACTATTGTGGCAAACTTTTTACCAGAAATTCCTTCATGCGTGATCATATTAGACGAACTCATCTAAAGGAGAAGAACGTGGAATGTGCAATTTGTAATATGAAGTTTTTCAATAACATCCTTCTCAGACGTCACATGGTGAAGCATAGCGGGGAGAAGAACTTTCATTGCGATGTGTGCGGCGAGAAGTTTTTCTGGAGGAAATGCCTCCGTACGCATATGGCTAGGCATAATAAGCATTTAAACAATTTACAGCTCTAA
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDMGTEYNWMNENEVYADMLLECFDISVSQHNEGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFVDMIGRGDFGPKVLIYPSQMKSEAEDPTVNEVEYLDDDDMDFSDDLPLKPREEPSISDITVSSLPIKNKRGRPKKAVVKTEKKAKIAKLEEKAKSSKAVVKGDNGSEASSKSSISSTKRNRLIKRNAILVLEGSTAVPFKWHRQDYLCFFCHKPFKDSELLKGHTKGEHGKTNIKTAVAYMRRDEKVKIDVTELSCKLCDNNIEDLNELIDHLKVVHKQSFAEFGYGLIPYRLKKDNFQCAICDENYQYFTKLNQHMNDHYGDYICDICGKSFLSQDRLRCHSMSHGSFKCVSCTETFDSLTRKNNHDFQVHNRDRKVKCCYCSETFLNYMQRKKHYASAHNVATAEYKCPVCGKVFQIMSKMKVHLKEVHMKEKRFSCTLCDQKFFSKTHVQKHMVKHFGERVYHCNICMKSYARKQTLRDHMRIHDNDKRNNRHLTSCHLCQLKLSSAALKQKHIELEHPDDGSLQCDNCSKEFHTKQGLKMHTKKCKAEELFENVKEESFDIDLDENYEEVKGPSVKQIRENIVTIINMSTAIPFNFYKNKFNCFYCSQDFADSDSMREHTVLEHPICDINEKCIKKCRETVACVKIDVSTLACKVCFESVNDLDNLIDHLIVKHEANYDKSITTCLQPYRLSKDHMACPNCPEEVFRFFGTLLKHMNKKHTNNNIICVYCGQMFRRDQNLRVHIWRHHRDGRFNCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCNYCGKLFTRNSFMRDHIRRTHLKEKNVECAICNMKFFNNILLRRHMVKHSGEKNFHCDVCGEKFFWRKCLRTHMARHNKHLNNLQL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -