Basic Information

Insect: Ephestia elutella
Gene Symbol: -
Assembly: GCA_018467065.1
Location: CM031592.1:14852890-14856889[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2e-07 2.5e-05 26.0 4.1 1 23 186 208 186 208 0.97

2 11 0.0018 0.23 13.5 3.8 1 23 214 237 214 237 0.98

3 11 3.6e-05 0.0045 18.9 0.2 1 23 246 268 246 268 0.97

4 11 0.00012 0.015 17.2 2.3 1 23 275 298 275 298 0.98

5 11 0.00014 0.018 17.0 1.0 3 23 306 326 304 326 0.96

6 11 0.00024 0.03 16.3 0.4 1 23 332 355 332 355 0.96

7 11 0.016 2 10.5 1.1 2 23 361 380 360 380 0.97

8 11 8.3e-07 0.0001 24.1 1.1 1 23 386 408 386 408 0.97

9 11 6.6e-06 0.00081 21.2 2.0 1 23 414 436 414 436 0.98

10 11 0.00032 0.04 15.9 0.4 1 23 442 465 442 465 0.97

11 11 0.0014 0.17 13.9 0.7 1 21 471 491 471 492 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2e-07	2.5e-05	26.0	4.1	1	23	186	208	186	208	0.97
2	11	0.0018	0.23	13.5	3.8	1	23	214	237	214	237	0.98
3	11	3.6e-05	0.0045	18.9	0.2	1	23	246	268	246	268	0.97
4	11	0.00012	0.015	17.2	2.3	1	23	275	298	275	298	0.98
5	11	0.00014	0.018	17.0	1.0	3	23	306	326	304	326	0.96
6	11	0.00024	0.03	16.3	0.4	1	23	332	355	332	355	0.96
7	11	0.016	2	10.5	1.1	2	23	361	380	360	380	0.97
8	11	8.3e-07	0.0001	24.1	1.1	1	23	386	408	386	408	0.97
9	11	6.6e-06	0.00081	21.2	2.0	1	23	414	436	414	436	0.98
10	11	0.00032	0.04	15.9	0.4	1	23	442	465	442	465	0.97
11	11	0.0014	0.17	13.9	0.7	1	21	471	491	471	492	0.94

Sequence Information

Coding Sequence: ATGGCTAATGTAAAAAGTAGACCAAAGGCACCAAGAAGTGCATCTACTAAGAAAGGTTGTGGTAAAAATATAGATAAACCTACAGGTGTTGATGATGCCAAAGGTGTGAAAAAAACTAAACACAAGCGAAGCAATGCTGAAAAAGAACCACagctaataaataattttgtacaTGAATTGAGTCGTAAAAATGGAAGGAATGTCAGAGATCATATCAGCATAAGTAACAGTTTGCTAACAAagaggattaaaaaaaaaattaaagatcatataaaactttttgacaatatattaaaaagCGAACTGATGATCCAAGACCGcagtaaaaagaagaaaaatggaGTCGCTCCTGCTGTTAACAATAATGATATTGGTATATCTAACCAAAATGAAACTGAAACAAGTGCAATACTAATAACAGGAATAAATTCAAGTAAGAAAAATTCTAGAAAAAAGAAAGAGAAACAAATTGAGCCCAAACCTCAAATCAAGCCCACAGAACCAACTAATACTAAGGAAGTACAACTAAGCAGTGGAGTGCTGTTACTGCCATGCTTTGAATGCCACTACTGTGGCAAAAAATATACCAACAAATCATCTCTGAGACGTCATATATATGTCCACTCGAAAATCAAACAATATGAATGTGTTAAATGCCTGAAACAGTTCAGTCATAAAGTCAATCAGCAATCGCATATTAGAAGACGTCACAAAGAGTTGTACACACCAAAAAGTTATGTATGTCAGATTTGCGACAAAATATTCCGCTTGAAAGAAAGCTTGAGTTCCCATCTTGATGTTCACATACATAAGTATGGCAGTTTCAAATGTTTGTATTGTACGGAGAGCTTTAGTGACCAAAATAAGTTGGTAATCCATAAAAAGACTAAGCATCTAAGTGCAACTCCTTTAGATTGTCACATCTGCGATGAAAACTTTAGCACTAAGCTAAAGCTGGCTCAGCATATCAAAGAGCATTTGAATCTCAAAGGTTTTATTTGCCAATATTGTGGTAAAGAGTACAAGGAGCTTGGTTCAATGCGTAGGCATGTACAAGTTAGTCACGGTGGCCGTCGAGTACAATgtcctatttgtaataaaaagttaAGAGGACATTTATCAGAACATATGCGAGTCCATGAGAACAGACGTCCCCACGAATGTCCAGAGTGTGGGCAACGTTTCACTCAGTCCACTCAGCTCAATGTTCACCGCAGAGCTCACACCGGGGACAGACCATATCCGTGTAGGATTTGCAATCGTCGTTTCTCACATTCAAACGCTTTAATGCTACATATCAGGAggcacactggggagaaaccatttccTTGTGCTATGTGTCCCATGTATTTCTCCCAGTTGCCACACATGAAAGCTCACATGCGTAATATTCATGGTAAAGCAAATGCGTACAAGTGTTTCAATTGTGGACAGTTTTTTAAGTTAAAGGTTCAGTTGGAGGCCCATGAAAAGAATTGCGCAAACCAAGTCGGGGAGCTCTGTATCGAGGTGAAGGTGGAATTTGAAGAGGCGGACTCAGGCATGACCCTCTCTCGCATGAGATACCTCCTCGCCCTACTTCTGACCATGATAGCTTCGGAAGACAAGCTCAAATATTTAGGTTTCAACAAACGTCTGATTGACGACCTCCTACTGGAATCTCTAGAGGCCATGGGTCAAGTGCCATGCAAGGACATATCTTTGACCCCACTGAAGCGTCTAAAGGTCAACATTGACATGCTCCTTAACGGAACTGTGCCCAAGGAACAAATGGAGAAGTTTCGTGCTGAGAATAAGACTACTGAAGAACTTTTGGAGTTGCTGACTGATGATAAGAAATTGTTGAAGAAATATTATTAA
Protein Sequence: MANVKSRPKAPRSASTKKGCGKNIDKPTGVDDAKGVKKTKHKRSNAEKEPQLINNFVHELSRKNGRNVRDHISISNSLLTKRIKKKIKDHIKLFDNILKSELMIQDRSKKKKNGVAPAVNNNDIGISNQNETETSAILITGINSSKKNSRKKKEKQIEPKPQIKPTEPTNTKEVQLSSGVLLLPCFECHYCGKKYTNKSSLRRHIYVHSKIKQYECVKCLKQFSHKVNQQSHIRRRHKELYTPKSYVCQICDKIFRLKESLSSHLDVHIHKYGSFKCLYCTESFSDQNKLVIHKKTKHLSATPLDCHICDENFSTKLKLAQHIKEHLNLKGFICQYCGKEYKELGSMRRHVQVSHGGRRVQCPICNKKLRGHLSEHMRVHENRRPHECPECGQRFTQSTQLNVHRRAHTGDRPYPCRICNRRFSHSNALMLHIRRHTGEKPFPCAMCPMYFSQLPHMKAHMRNIHGKANAYKCFNCGQFFKLKVQLEAHEKNCANQVGELCIEVKVEFEEADSGMTLSRMRYLLALLLTMIASEDKLKYLGFNKRLIDDLLLESLEAMGQVPCKDISLTPLKRLKVNIDMLLNGTVPKEQMEKFRAENKTTEELLELLTDDKKLLKKYY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01220849;
90% Identity: -
80% Identity: -