Basic Information

Insect: Ephestia elutella
Gene Symbol: -
Assembly: GCA_018467065.1
Location: CM031581.1:1160650-1165448[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.04 4.9 9.3 1.5 1 21 146 166 146 167 0.95

2 13 0.00029 0.035 16.1 2.6 1 21 174 194 174 197 0.90

3 13 0.76 93 5.3 5.3 1 23 202 224 202 224 0.95

4 13 0.00013 0.016 17.2 0.1 1 23 246 268 246 268 0.99

5 13 1.1e-06 0.00013 23.7 2.2 2 23 276 297 275 297 0.96

6 13 0.00025 0.031 16.3 0.4 1 23 303 325 303 325 0.99

7 13 2.4e-05 0.003 19.4 2.2 1 23 331 353 331 353 0.97

8 13 1.3e-06 0.00016 23.5 0.9 1 23 359 381 359 381 0.96

9 13 7.8e-05 0.0095 17.9 0.4 1 23 387 409 387 409 0.95

10 13 0.00018 0.023 16.7 1.4 1 23 415 437 415 437 0.97

11 13 7.5e-06 0.00092 21.1 3.7 1 23 443 465 443 465 0.99

12 13 6.5e-05 0.0079 18.1 1.5 1 23 471 493 471 493 0.98

13 13 9.8e-05 0.012 17.5 0.6 1 23 499 521 499 521 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.04	4.9	9.3	1.5	1	21	146	166	146	167	0.95
2	13	0.00029	0.035	16.1	2.6	1	21	174	194	174	197	0.90
3	13	0.76	93	5.3	5.3	1	23	202	224	202	224	0.95
4	13	0.00013	0.016	17.2	0.1	1	23	246	268	246	268	0.99
5	13	1.1e-06	0.00013	23.7	2.2	2	23	276	297	275	297	0.96
6	13	0.00025	0.031	16.3	0.4	1	23	303	325	303	325	0.99
7	13	2.4e-05	0.003	19.4	2.2	1	23	331	353	331	353	0.97
8	13	1.3e-06	0.00016	23.5	0.9	1	23	359	381	359	381	0.96
9	13	7.8e-05	0.0095	17.9	0.4	1	23	387	409	387	409	0.95
10	13	0.00018	0.023	16.7	1.4	1	23	415	437	415	437	0.97
11	13	7.5e-06	0.00092	21.1	3.7	1	23	443	465	443	465	0.99
12	13	6.5e-05	0.0079	18.1	1.5	1	23	471	493	471	493	0.98
13	13	9.8e-05	0.012	17.5	0.6	1	23	499	521	499	521	0.97

Sequence Information

Coding Sequence: ATGGCCATGATAGATCTGTTGGATAGAAACAAACTCGATGCAAGATGCCGCACTTGTCTAAATGAGTCCGCCGACACAATGTTTGATATTTTCGCTGACCAGACAAATGCTACGACTGAGGCTACGAGTTTGTTTACTGTTTTGATGTCATGTACTAATGTAAAGATTGATCAGGACGATAATTTCCCTAAAGGGATGTGCAGCAACTGTTACGAATGTCTTATAAAATTTTGGGAATTCAGGAAATTGGCAGAGAAGATAGACTCTCAGTTACACTTTCAGTTCGGACTCAACTGTTCAgatgtcaaaataaaattagaaaatgaaaataatgataCGAACTGTGATATCTTTGAAATCGATTTTGTAGCTGATGAACCTGAAATTGAATTTGAATCAACAAATAAAGAAGTAGAAGAAACTTCTTCAGAAAAATTCACATGTCAAAGTTGTTCTAAACAATTTGACAGTTTCTATAAGTTGGAAGAACATTACAACTTACTCTGCCAAGCAACAATATACCAATGTAAGATATGCAGCAAAGAATACAAAACCAAATCCAAACTGGATAGACATAATACATTACGGCATAATAAAAACTCGTACACATGCATATTATGTTCTGAAAGTTTTAGACATCATTTCAAATATGTCAAGCATTTAATCTCACACAACAAACATGTTAAAGATAGGCAATACATGACTGAAATAAACCAAAATGAAGAAAACCAAAGATTCAAATGTGAAAATTGTTCTGCTGATTTTAAATCTATGAATGCACTTGCAGCTCATATGCGAATACATACGAAAAAAGACAGGGTGTTATCCTGTCCTATATGTAATAAGGTTTTCAAAAAGTTAAGCCATTTAAAAAGGCATGAGATGAGTCATGAAAATAACAAACCATTTAAATGTACGTTGTGCAGCAAAGCTTTTATTACGGAGAGCATTCTTGCGGAACATATGAACAAACATAACAAAATAAAGCCACATGTGTGTCCAATTTGTTCCAAGGCATTCACACACATGTCAACGTTGAGTACGCATGTGAAGATACACACACGAGAGAAGTCATATTTGTGTCCGACTTGTGGAAGAAGATTTGATTCAAGTACGAATTTGAATCAACATGTCAGGAGGCATCTTGGACTGAAATGCTATGCTTGTAGTTCTTGCCCAAAAACATTTGTTAGTAAAGGAGAGCTGAAAACCCACAGTGTGACGCACACAGGCGAGCGCTCCTTCATATGCGAACTCTGCAGCGCCAAATACACTACGAAGAGTTCCCTTAGGAAACACTCTCTGACCCACCAGGGCATCAAACCGTACCAGTGCGAAAACTGCCCCATGAGGTTTCCGAGCAAGTACCACCTGAAGCGCCACAGCCGCTCGCACACGGGCGAGAAGCCGTACGAGTGCGAGGTGTGCGAGCGCGGGTTCACGCAGACCAACGATCTGCACAAGCATCGTAGGGCTCATCTCGGGGACAAGCTCTACAGATGTACCCAATGCTCCGAAGGCTTCCGCCTCAATTCGGAGCTCCGCCAACACATCTCGGAACATTTCATATCGGAGCGGCTCGGAGCTATGACTGTGAGCAAGCCTGCCGCCATGACGCACACTATCAAGGCTTTCGTCGAGTCGTTCTCTGACAAAAATGTCAACAATAATGATAATGTTGAAGGAAGTGGTACTGTTGAAGTTGTTAATGAGATATAA
Protein Sequence: MAMIDLLDRNKLDARCRTCLNESADTMFDIFADQTNATTEATSLFTVLMSCTNVKIDQDDNFPKGMCSNCYECLIKFWEFRKLAEKIDSQLHFQFGLNCSDVKIKLENENNDTNCDIFEIDFVADEPEIEFESTNKEVEETSSEKFTCQSCSKQFDSFYKLEEHYNLLCQATIYQCKICSKEYKTKSKLDRHNTLRHNKNSYTCILCSESFRHHFKYVKHLISHNKHVKDRQYMTEINQNEENQRFKCENCSADFKSMNALAAHMRIHTKKDRVLSCPICNKVFKKLSHLKRHEMSHENNKPFKCTLCSKAFITESILAEHMNKHNKIKPHVCPICSKAFTHMSTLSTHVKIHTREKSYLCPTCGRRFDSSTNLNQHVRRHLGLKCYACSSCPKTFVSKGELKTHSVTHTGERSFICELCSAKYTTKSSLRKHSLTHQGIKPYQCENCPMRFPSKYHLKRHSRSHTGEKPYECEVCERGFTQTNDLHKHRRAHLGDKLYRCTQCSEGFRLNSELRQHISEHFISERLGAMTVSKPAAMTHTIKAFVESFSDKNVNNNDNVEGSGTVEVVNEI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -