Basic Information

Insect: Ephestia elutella
Gene Symbol: -
Assembly: GCA_018467065.1
Location: CM031581.1:6454908-6463696[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0046 0.57 12.3 8.1 1 23 153 175 153 175 0.99

2 14 6.8e-06 0.00083 21.2 1.1 2 23 180 201 179 201 0.97

3 14 0.0027 0.34 13.0 0.0 2 23 207 228 206 228 0.95

4 14 6.7e-06 0.00083 21.2 0.2 2 23 235 257 234 257 0.97

5 14 1e-06 0.00013 23.7 1.3 2 23 266 287 265 287 0.97

6 14 4.5e-07 5.5e-05 24.9 3.3 2 23 341 362 341 362 0.98

7 14 6.2e-07 7.6e-05 24.5 2.2 1 23 368 390 368 390 0.98

8 14 5.4e-05 0.0067 18.3 2.2 1 23 396 418 396 418 0.98

9 14 3.1e-08 3.8e-06 28.5 1.3 1 23 424 446 424 446 0.96

10 14 6.7e-07 8.3e-05 24.3 0.9 1 23 452 474 452 474 0.98

11 14 1.5e-05 0.0019 20.1 0.8 1 23 480 502 480 502 0.98

12 14 0.028 3.4 9.8 8.5 1 23 508 530 508 530 0.97

13 14 4.1e-07 5e-05 25.0 1.6 1 23 536 558 536 558 0.99

14 14 0.003 0.37 12.9 1.0 1 22 564 585 564 586 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0046	0.57	12.3	8.1	1	23	153	175	153	175	0.99
2	14	6.8e-06	0.00083	21.2	1.1	2	23	180	201	179	201	0.97
3	14	0.0027	0.34	13.0	0.0	2	23	207	228	206	228	0.95
4	14	6.7e-06	0.00083	21.2	0.2	2	23	235	257	234	257	0.97
5	14	1e-06	0.00013	23.7	1.3	2	23	266	287	265	287	0.97
6	14	4.5e-07	5.5e-05	24.9	3.3	2	23	341	362	341	362	0.98
7	14	6.2e-07	7.6e-05	24.5	2.2	1	23	368	390	368	390	0.98
8	14	5.4e-05	0.0067	18.3	2.2	1	23	396	418	396	418	0.98
9	14	3.1e-08	3.8e-06	28.5	1.3	1	23	424	446	424	446	0.96
10	14	6.7e-07	8.3e-05	24.3	0.9	1	23	452	474	452	474	0.98
11	14	1.5e-05	0.0019	20.1	0.8	1	23	480	502	480	502	0.98
12	14	0.028	3.4	9.8	8.5	1	23	508	530	508	530	0.97
13	14	4.1e-07	5e-05	25.0	1.6	1	23	536	558	536	558	0.99
14	14	0.003	0.37	12.9	1.0	1	22	564	585	564	586	0.92

Sequence Information

Coding Sequence: atGGATTTACCTAGACTAGCAGCACCGAAAATGCTTTCAAGCTGTTGTCGTGTTTGTATGAAAGCAGATTGCTGTTTGTTATCACTATTTGACCACATGATTGTGGAGCAGCAAGTTATTCTCTTAGCTGATGTTCTAATGAACTGCACAGGCATACAGGTCTCCCAAGGGGATGGTCTGCCACAACTCATTTGTGCAGATTGTGCTAAGACTCTTGAAACAATGTGTGCATTCAGAACAAGAGCTTTGATCTCTGAATCTGAATTCAGAAAGCTTGCCACACTAAATGAAGTAAAAGATGAAGTTATCAAATCTGAAATGAAACAGGAGGAAGATGACGATATAGGCAATATGGACTTACTTTTAGAAGATTTATCTGTGTTCTGTCCACTAAATATACCAAAAGAAGAAAGTGATTCTCAAAGTTTAGGTAACTCAGATTCTCAAGCTAGAAGTTTTAAATGTGATCAATGTTCTAAAAAGTATACAAAGAAGCATAAGTTTCTCAAACATTTAAAATCACACGAGAGCCCTATGTACTGTGACATTTGTAAAACAGTTTTTTATAGTAAGAAAGCTCTtaacaaacatataaaaacACACAGATCTGAATTATTAAAATGTGATTTATGTGATGAAGTGTTTGCTACAGAAGCTTTTTTGTTTGAGCATATAGTAAATCATACAAATGAGGCTAATGTAAAATGTCCAAAATGTGATATTATATTTAGTAGGAAAGGTCAATTTGTTGCACATCTAAGGAAAATTCATGAAATATGTGCATCAAAAGATATTAAATGTGACATTTGTCTGAAAGAATTTTCTACAAAATCTCTTCTAAAAAGGCACATGAAGCTGCACAGTGAGGAACAGCCATACAAGTATGAGAACTGTTCAAAGAGGTATAACCAGGAAAGCGAACCCTTACATATGACCATTCACAATGACATTAAGAATGAATATGAGGCTCATTTGAATAACGATGATCACAATATTTGTAATGATGCATCAAAAAAGAGAAAATGTGATATTTGTAAAAAGAAATTTTCTACAAAATCTCTTCTAACCAGACACATGAAGTTGCACAGtgAGGAGCGGCCATACGAATGTACAAAGTGCAAAAAGAGCTACAGCCGGCAAGACCAGCTATTACAGCATATGAAGTGGCATGATGGGATCAAGCCTTATATTTGTAGTTATTGTAGTAAAGCATTCAACCAGCTGTGCAGCCTCAAGGACCACGTAAGGATCCACACGGGCGAGACCCCGTACCTGTGTTCCGAGTGCGGCAAGAGCTTCACCAACAGCTCCAACCTGCGGCAACACCTCATGAGGCACAGCGGAGTGAAGCCGTTCACCTGCAGTCTGTGTCCCAAATCGTTCACTACTAAAGGCCAGTTGTCGGCGCACCTGACGACGCACACGGGCGCGCACCCGTACAAGTGCGAGGAGTGCGGGCGCGCCTTCACGAAGGGGAACTCCTTGAAGAAGCACAAGCTGATACATCTGGGGGTCAAGCCCTTCGCCTGCGACACTTGCCATATGCGGTTCTCGTGCAAGGAGCACCTGAAGCGCCACACCCGCATCCACACGGGCGAGAAACCATACAAGTGCAAGTTCTGCGAACGCGCCTTTACGCAGAGCAACGATTTAGCGAAACACATCCGGACACACGTCGGGCAGAACATATACCAATGCACAGTATGCAGCTTGCGGTTCAGACTAATCAGCGAACTAAAGAAACACTACCCCACGCACTACGTAGACGGGGATGCAGTCCCCACAGTAGCCATCAGCAAAGGCGTCGAGGCTCCCGTACTAATGCTCAAGCAAGACCCTACGCCCGAAACCTTACCCGAACTCAAACCTTTAGACCCTAGGGTCACTAAGCCGCAAGACCCAACGCTCGAAGCCATACCCGAAGTCAAACATATGGACCCTAGGATCACTATCACTATAAACAGCAATGGCTTTGATAAGAATGGCTTGGCGGGCGatattactattaatttatcgcCCGAAAAAAATTAA
Protein Sequence: MDLPRLAAPKMLSSCCRVCMKADCCLLSLFDHMIVEQQVILLADVLMNCTGIQVSQGDGLPQLICADCAKTLETMCAFRTRALISESEFRKLATLNEVKDEVIKSEMKQEEDDDIGNMDLLLEDLSVFCPLNIPKEESDSQSLGNSDSQARSFKCDQCSKKYTKKHKFLKHLKSHESPMYCDICKTVFYSKKALNKHIKTHRSELLKCDLCDEVFATEAFLFEHIVNHTNEANVKCPKCDIIFSRKGQFVAHLRKIHEICASKDIKCDICLKEFSTKSLLKRHMKLHSEEQPYKYENCSKRYNQESEPLHMTIHNDIKNEYEAHLNNDDHNICNDASKKRKCDICKKKFSTKSLLTRHMKLHSEERPYECTKCKKSYSRQDQLLQHMKWHDGIKPYICSYCSKAFNQLCSLKDHVRIHTGETPYLCSECGKSFTNSSNLRQHLMRHSGVKPFTCSLCPKSFTTKGQLSAHLTTHTGAHPYKCEECGRAFTKGNSLKKHKLIHLGVKPFACDTCHMRFSCKEHLKRHTRIHTGEKPYKCKFCERAFTQSNDLAKHIRTHVGQNIYQCTVCSLRFRLISELKKHYPTHYVDGDAVPTVAISKGVEAPVLMLKQDPTPETLPELKPLDPRVTKPQDPTLEAIPEVKHMDPRITITINSNGFDKNGLAGDITINLSPEKN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00651964;
90% Identity: iTF_00651964;
80% Identity: -