Edan012065.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ498087.1:204696-208184[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.7e-05 0.0045 17.4 2.4 1 23 130 153 130 153 0.98 2 13 0.052 3.5 8.3 3.1 2 23 184 206 183 206 0.93 3 13 0.029 2 9.1 3.0 1 23 227 250 227 250 0.95 4 13 9.8 6.6e+02 1.1 1.8 1 23 267 292 267 292 0.85 5 13 0.029 2 9.1 1.1 1 21 323 343 323 346 0.90 6 13 3.1 2.1e+02 2.7 2.8 1 23 349 372 349 372 0.91 7 13 7.7 5.2e+02 1.4 2.0 2 23 375 397 375 397 0.89 8 13 0.32 21 5.8 4.5 1 23 421 444 421 444 0.90 9 13 4.3 2.9e+02 2.2 0.4 1 12 447 458 447 463 0.83 10 13 0.0034 0.23 12.0 1.3 3 23 474 495 472 495 0.96 11 13 0.00028 0.019 15.4 0.9 1 23 510 533 510 533 0.94 12 13 8.5e-06 0.00057 20.2 1.6 1 23 539 561 539 561 0.98 13 13 3.9 2.6e+02 2.4 0.5 2 23 575 597 574 597 0.87
Sequence Information
- Coding Sequence
- ATGGGAAAAGCGGCTGGAGCGCGCGCGACAGGCCGTGCGCCAGTTTCGTCGTCAGCGTTCTCTGTTGAGCGGCATAGGAGTCAGTACACCATCTTAAATTCATCTTGGACGATTAACCCTCGTATCCCGATCACCCCGAAGCCGAAATCTCCCGACTCCTATCCAGTGACCGTCAAACATTCAGCCCAGCAAGTGATAACCCTGACATGCAACGTGAAGAACTGTACTTGGTCTACCAAAGACAAAGACAAGAACCTGGTACTCTCAAGACTGAAATTTCATGCTAAATTGTTCCACCCAAAAATAACAGatatatttgacacttgtttTGAAATGTTTGAGAAGCAGAAGGTATTTGAACAACATATCTGTAAAAATCTGACTAAATTTCAGTGTCGATTCTGTAAATTAAGCTTTGATTCTAAATCTGAATTCACATCTCATATAAAGTCTGTACATGATATTCACGATAGGTTACAATATAACCATCAGACCAAATATGCAGCAACGCTTGTTGAGAGTCATGAgcaaaacaattcaaaattattaacctgtaaaatatgtaattgtaattttttcgatgctgaaaaattattgtctcattcaaaaaatttccatttgataagttcagaaataaatatggatactgtaaattttgaaactcctctgataaaaaaattcgtcTGTAACACATGCAGTTCACAATTTACACAacttagtaaatttaaattacattattacaaaattcataAAACAGTCATACCAACCCTTACagtttcatacaaaaaatcagtaaaatattaCTGTAACCTGTGCCCTTCAcgtaatagaaattttaatttaacaaaattaaaacaacattatTCAGAGAAACACAAGAAAATATTGGACTTCAGTGAATTTGATGTGTcaaatttttgttccattttagtTTCTGAACTTTGTAAAGAGGAAGgaaaagttatttttacttGTCAACATTGTCCTGATTTGTACAGTACTGCTGAAGATTTGAATAGACATAAAGTTGAAAAGCATGGTGAATTTTGTTGTAATAGATGTACGATGATATTTGACACTGAAAAAGCACATAAAATTCACATGGAAGAAGTACATTTTGGTGAGTGTAAATTTTGTGACTTTACAACCTTCAATTTTATTGGCTTGCATGTTCATGTTACCAATAAACACACTGAAAGTTTAGATGTTTCTGATTTTAGAACAATTTACAAAGTTAAACATGCCAAAGATGATGCGTATCACGTGTGCTTATTGTGTCAAAGATGTGTTAGCTcacaacaaaatatgaaaatgcactATTTTTGGTTTCATAACAGATTCTTATgtgattattgtaaattaaattttagtatgtCCACTTTCGAATCGGAACATTTTTCTTCCAATCATTTGACCGATTGTGTCCATTGTAATCAAAGTTTCCCTGATTTTAAAGCGTTGGATTCACATTTACAAACCAAGCATTTAAATGAGACCTACTCCATTTGTGAATTCTGTGGAGAGGACTATAAATGTACACAATGCCCAATGCAGTTTAATTTTTCAAGGAACTTGGAACAGCATGTTTCTGAACTGCACACGAACCGCTATGCATATTCATGTACAGTGTGTTCCAAGATATTTTCTACTGAATCTGACTTCAACCTTCACATGAAATTCCATCAGGGTTCAGACAGTAAAGCTGATTTGTTGCCGGTGTTACGTTGTGAGTTGTGTGATGGATTCAGTCTGAATCGGGATGCAATGCAGAAGCACGTCAAACGTAGACACATCAAAAATGGCAAATTGATCAATGTCAAA
- Protein Sequence
- MGKAAGARATGRAPVSSSAFSVERHRSQYTILNSSWTINPRIPITPKPKSPDSYPVTVKHSAQQVITLTCNVKNCTWSTKDKDKNLVLSRLKFHAKLFHPKITDIFDTCFEMFEKQKVFEQHICKNLTKFQCRFCKLSFDSKSEFTSHIKSVHDIHDRLQYNHQTKYAATLVESHEQNNSKLLTCKICNCNFFDAEKLLSHSKNFHLISSEINMDTVNFETPLIKKFVCNTCSSQFTQLSKFKLHYYKIHKTVIPTLTVSYKKSVKYYCNLCPSRNRNFNLTKLKQHYSEKHKKILDFSEFDVSNFCSILVSELCKEEGKVIFTCQHCPDLYSTAEDLNRHKVEKHGEFCCNRCTMIFDTEKAHKIHMEEVHFGECKFCDFTTFNFIGLHVHVTNKHTESLDVSDFRTIYKVKHAKDDAYHVCLLCQRCVSSQQNMKMHYFWFHNRFLCDYCKLNFSMSTFESEHFSSNHLTDCVHCNQSFPDFKALDSHLQTKHLNETYSICEFCGEDYKCTQCPMQFNFSRNLEQHVSELHTNRYAYSCTVCSKIFSTESDFNLHMKFHQGSDSKADLLPVLRCELCDGFSLNRDAMQKHVKRRHIKNGKLINVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -