Edan016306.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ497583.1:715120-722326[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9 6.1e+02 1.2 0.7 1 8 278 285 278 292 0.88 2 14 5.7 3.8e+02 1.9 0.2 2 9 404 411 403 425 0.70 3 14 5.4 3.6e+02 1.9 1.1 2 10 431 439 430 446 0.83 4 14 1.5 1e+02 3.7 0.1 2 11 459 468 458 470 0.90 5 14 0.076 5.1 7.8 3.4 1 23 485 510 485 510 0.98 6 14 0.00053 0.036 14.5 1.0 3 23 524 545 522 545 0.93 7 14 0.00015 0.01 16.3 0.7 1 23 554 577 554 577 0.96 8 14 1.2 82 4.0 0.2 2 23 582 602 581 602 0.91 9 14 0.078 5.3 7.7 0.7 2 23 609 631 608 631 0.87 10 14 6.5 4.4e+02 1.7 1.8 1 23 636 659 636 659 0.87 11 14 0.00024 0.016 15.6 2.8 3 23 676 696 675 696 0.97 12 14 0.14 9.5 6.9 0.9 3 23 740 760 738 761 0.91 13 14 0.061 4.1 8.0 5.7 1 21 781 801 781 803 0.82 14 14 0.013 0.86 10.2 1.1 1 21 809 829 809 830 0.93
Sequence Information
- Coding Sequence
- ATGGACCAAACCAGCAGCACTGAAAATCAGACGGCAATGGCCCCAGTGTATGGAAATATGGCAAATCTGTGCTTGCTCTGTGCCAGTGCCCAGAATCCAGAGGGACAAGCTTTTATCGACATCTTTGGCAAACGCGGAATGCATTTGAGGATTTTAGACAAGATTCATAAGTTTCTCTCCACTAATATTGAAGCTGGGTTTCCTCTTCAAGTGTGTGTTTCCTGTGTGGAGAGGTTGAATGTTTGCCATGAATTTGTGCAGTCAATTGAAGCGGCACACGAGAAACTTAAGGGTCTTCAAAAGGCATGGGAAGCTGTATATGCGATTGATATAAAGGAGGAGGCCTTGGATGATGATTGGTCAAAGATGGATTTTGATGTTCCTTCTCCTGAAGCAGATTTCCAGAATGAAGCTGatgattttgaaaatcattttctGCAACCGAGGAAGAAAAAGGGGACCATTGAGGACCAACAATCTGAAGAGTTTCCAACGTTGCGACAACCTTTTCTTGTGGTGAAAGGCTCTCAAATAGCTGTTTTTGTTTCTGAAGAAGATTCTATGGTTAAGTCTGAATTCAGATTAAGTcttgtaaacataaaaattaatgaacctGGCACCTACAACAAGGAATCAATCTCTGAAAAAGTTAGCAGAATCATGCAACATATCAAGAAatgTGTCCcaaaaaagcaaacaaaacCTGGAGGGAAAGTGGAAAGTTTACCTACTTCCACTGCACTCCTGCATTCCTGCCAAAGCTGCCAATGTTCATTCTTCCTGCAAGAAGAGATGGTGTCCCACTTTGAAAGTCTGCACCCTGAGGAAGTGCATCAGTGTACCGTATGTGGCGAAAACATTTGTGGTTCATGGGAAATACAAGAGAAACACATGGAACTGCACCGAGCTTTAAAAGAAGGTGAAACAGATGAACTTCTTTCCACTCTGCGAGTCCCCTCAGTCAGAACCAAAATGTTTGATCCTGAATTTGTTGTAGTCAAACTTGGAATCTACCCACAACATCTCAATCTCGCATTAATTGAAGTGTTGCAGTCTACATTTACAAATATAATCCAAAGAAATTTATGGATTAAGCCAGATATGAAAGAACAATTATATGAAGCGGTTAATACTTTTACCACTAATATTAGACGCTTTAAAAAGAATAGACGTGTCAGAAAGAGAATTCGAAAACCAAAACCAAAAGTGGAATGTGATGTTTGtgggaaaaaaatgatcaaGAGATACATAGAAAGTCATATGGAGAGCTTCCATAATCCTGAGAAAATGAAATGTCCTCATTGCAATTACTTTTACATGGTTTCTGATGAAAACTGTCACATTGAAGCACAACATAATGGTGGcaatattttgatttgcaaAATTTGTGATACAATGTTCAGTGCAACTGGTGAAGACCAACCACACATGACACCAAGATCTGATTTCCCATTCAAATGTTCTGTAAGATATTGCAGAAAAGTGTACCAGTGTGAAGAAAATCTTGAGAAGCACAGGAAAACTGCACATCAACCTAAACAAACGAAATCGGACGAAACTCCATGTTTGTGCGATCTTTGTGGCAAAGTTGTTGTTGACAAAAATTCTCTAAGAAAACACttacaatttattcattttccCATCAAAAGTACAGCTGTATACCCCTGTGACTTGTGTGATGCCACCTACAATACCAAAGCATTGTTAAAGAGACACAAAAGTTCCTTTCATGCTCCTAAAACTCCATGCGAGGTGTGTGGAAAATTGTTGGGCGCACGGACAATGTCTCGTCATATGAAACTTCACGACGATGATTGCAAGATTCCCTGTAAATACTGTGGAAAGTTGTTTATTACGCAACCACTATGTGAAATGCATGAGAAATCATTGCACGAAGGTGTTAGTTTTCGCTGTAAAATATGTcctgattttcattttaaaagcaTCAAGGGTATGGAGGAACATAATCTGAAACATGAACTTGGGGAGGAAATCATCTTGCCTCCTTATTTACAACCTGCACATTGTTCCATATGTTCAAAAAGCTTTCCCAATTCAATCAGACTTAAACAACACatgaaattacatgaaaaaacaGGGCACAATGGAGTTGTGACCATGAGGAGGAGGCGCAAAGCTGGACAGAGGAACACTAAAAAGAGCAATGATGGACCACCACCAGAGAAGAAGAGTAAAGTAAGAGAAGTGACAATTCCATGTTATGCATGTCTCATTCGATTCATGACTCAAGAAAGCTTTGACAGCCACATGCAGACACACCACCCAGATGGGTTTCCAAATTTTCCTCCCAAACCCTTGCCGAAGGTCACAGAATTTCGATATCAGTGTCGGTACTGTGATAAAACATTCAAGAAAAAAGATTTTTGCAATGACCATGAAACACTTCATGGAGGTGGGAAACAGTATGCTTGTGATTTTTGTGGCAAAAAGTACAGCTACTATAGTGACAAGTGGACACATCAAACCAAGAAGTGTACAGCGAGATATGAAGTTGGAGAAAGCTCATCTTCGCAATAA
- Protein Sequence
- MDQTSSTENQTAMAPVYGNMANLCLLCASAQNPEGQAFIDIFGKRGMHLRILDKIHKFLSTNIEAGFPLQVCVSCVERLNVCHEFVQSIEAAHEKLKGLQKAWEAVYAIDIKEEALDDDWSKMDFDVPSPEADFQNEADDFENHFLQPRKKKGTIEDQQSEEFPTLRQPFLVVKGSQIAVFVSEEDSMVKSEFRLSLVNIKINEPGTYNKESISEKVSRIMQHIKKCVPKKQTKPGGKVESLPTSTALLHSCQSCQCSFFLQEEMVSHFESLHPEEVHQCTVCGENICGSWEIQEKHMELHRALKEGETDELLSTLRVPSVRTKMFDPEFVVVKLGIYPQHLNLALIEVLQSTFTNIIQRNLWIKPDMKEQLYEAVNTFTTNIRRFKKNRRVRKRIRKPKPKVECDVCGKKMIKRYIESHMESFHNPEKMKCPHCNYFYMVSDENCHIEAQHNGGNILICKICDTMFSATGEDQPHMTPRSDFPFKCSVRYCRKVYQCEENLEKHRKTAHQPKQTKSDETPCLCDLCGKVVVDKNSLRKHLQFIHFPIKSTAVYPCDLCDATYNTKALLKRHKSSFHAPKTPCEVCGKLLGARTMSRHMKLHDDDCKIPCKYCGKLFITQPLCEMHEKSLHEGVSFRCKICPDFHFKSIKGMEEHNLKHELGEEIILPPYLQPAHCSICSKSFPNSIRLKQHMKLHEKTGHNGVVTMRRRRKAGQRNTKKSNDGPPPEKKSKVREVTIPCYACLIRFMTQESFDSHMQTHHPDGFPNFPPKPLPKVTEFRYQCRYCDKTFKKKDFCNDHETLHGGGKQYACDFCGKKYSYYSDKWTHQTKKCTARYEVGESSSSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -