Edan005863.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ501820.1:2272619-2318822[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0046 0.31 11.6 1.9 3 23 121 142 119 142 0.94 2 16 0.00051 0.034 14.6 1.2 1 23 148 171 148 171 0.95 3 16 0.021 1.4 9.5 3.7 3 23 244 265 242 265 0.94 4 16 0.0095 0.64 10.6 0.2 2 23 270 290 269 290 0.87 5 16 0.00092 0.062 13.8 0.3 2 23 315 337 314 337 0.93 6 16 4.8 3.2e+02 2.1 0.9 1 23 355 378 355 378 0.95 7 16 0.011 0.73 10.4 2.7 1 21 385 405 385 406 0.92 8 16 0.062 4.2 8.0 2.3 2 23 489 510 488 510 0.96 9 16 0.48 32 5.2 0.3 2 14 536 548 535 558 0.79 10 16 1.8 1.2e+02 3.4 0.6 1 23 575 598 575 598 0.89 11 16 0.011 0.74 10.4 3.1 1 21 605 625 605 626 0.95 12 16 6 4.1e+02 1.8 6.3 1 23 682 705 682 705 0.88 13 16 0.00021 0.014 15.8 0.7 1 23 736 759 736 759 0.93 14 16 9.5 6.4e+02 1.2 2.4 1 20 764 783 764 784 0.91 15 16 0.00098 0.066 13.7 0.8 2 23 793 815 792 815 0.94 16 16 0.32 21 5.8 1.7 2 23 823 845 822 845 0.95
Sequence Information
- Coding Sequence
- AATCCCGTAAATCAAGAAATTTCCGACAGCTCGGCGACAGAATTGGAGTACTACCAAACAACGTTAGACATTGCTTCCATCTGTAATGAAAATTCCATAGACATCAAAGAAAATGAACTTCCCGCTGAAACTTCAGTTTCTGAAGACATTGACCTATCAGAATTTGCAGCCCAGTTCGTTAAATCAGATAACGTCATTGCAGACCAGTTCGATGTGGATCCTATACAAATCTCAGTGTGCCCCAGTATAACAGATACAGATACGAGATTGATATTACGCCCGAGAGAGACAGTTGGACAGCAAAACTTTTCtaccaaaaagaaaaatttattgcaacaaacgATGGGTGGTGCAGTAAATTGTGACATATGCAATGAAAAAGTGAGACACAGATACTCCTTgattaaacataaaaacttgAAACACGGCATGAACTTACACTTCGATTGTGAGAAATGCGGGAAAAAGTTTTCATCTTTCATGAAGATTAATATGCACATTCGACTCATGCATGCTGCAAATCCTTGTAAAATCTACGGTAAAGCAGTTGCAAAATCTGCGTATcaagataatttaaattaccatCAGACTAAACCAAGTACAGTGTTGGAATCTTTAGAACCAGTGACATGCGACATATGCAAATTTAGAGCTGAAAACAAGTTTTGTCTTGTACATCACATCAACTGTAATCATCTGGACGTGGTTGTTGAAATTCTACCAATTTGCTGCGAGATGTGCAACAAAGAGTGCACCACATACGCCAACTTTCTAATGCATCTGAAAAATGTGCATGGGCCCAAGCTAAAGTGCGACTACTGCGATAAAATGTTCCCCAGGTATCTAATGGCCCAACATATCGAATGGCATCAAAGTGGCAGAGATATAACTCGAAGATCCAACAGACATGAAATAAAAGGCAGGACATTTTCAAAGAATCTGCAATGTACTGAATGTGGTACAAAATATGCACAACCTGAAATGTTAGCCTGGCATACTGAAAACTGTCATGGAAATAACCCGACTGTAAGAATTGTCGAACAATCGTCAAATCTTCATAAATACCAATGTATTTTCTGTAAAACGGCGTATTATTCACTATTAGATGTCATTACACATCTTAAAAGGAAACATCAACTTAGAAAGTTACCATATCATTGCAAAATTTGTCATAAACAGTTTGTAAGAAATCGGTTCTTACCAAAACACATTTTGAAATGCAAAAAGATTTTCACCAATGATGAGAGTTCAAAGCATGTCAATGACAGTAATAAACTCATAGAAAATCATGAGCAACTCATTGAAGAAGTGATCACCTCAGATTTCGAAATTGAGAATCATGAAGACAAACTGGAGCTAGAGGGTGGACCTATGGATTGTTTCTCTCGGAATGTTCAGACTGATGTGTGTCCCCCACTGGATGGAAAATTATCAGAATGCCGAGTGTTGGTGCATAAGTTACTATATTGTGAGCTGTGCTCTTTTCACACAGACAACAAGACTGAACTTTCAACCCACATGAAAGATCATCTGGGATTAAATACAGAAGaaGACACCATGTCCAGAAACCATCCATCAAGTGATCACAggaaattaaaaactttgaaatgtaCACTGTGTGGTACTGTATATGCTCGTCCTGAAATAATGGATTGGCATACTGAAAATTGTCATGGTGAATATGCCATTGTCAAATGTGTGACGTTTGGTAAGAAGAAACATTATCAGTGTGCCATATGTGAAATTGGGTGTAATGATATATATTCCACTATCCAGCATCTCTTTAATCAACACAAATTGAGAAACTTTCCTTATCGTTGCAATTTTTGTGATAAGCAGTTCATATATTTTCGAAGTAAAAGGAGACATATGCTAAAATGCAAGAGTGTAAATAGTGTAACTCCTGCATCATTAAATCGCAATTTAAATGTCGAACATCAAAGAAGTATTATTCATGTATCTGACATAAggcaaaaaaataagttttgtgtTAAATTAACAGAATCAGAAAATTGCATCCCCTGTTTACCctcatcaaaatatttcaattgtttaaaTTGCGAGgaatcatttttttcctttaccCATCTTCTTTCACACTGTTCCACCAAACATCCAGGGAAACAAGTTCTGTTTTGTGATGTTTGCAATGATGaattaaattcatacaaaaagtATCTTAAACACAAACCCGAGAAACATATATTTCCATGCAACATTTGCTTTGCCAAGTTTACTTCTACGTCCTCTCTGAAAAAACACGTAGCAAATATGCATTCTGGTACGAAATTTTcctgtaaattttgtaatgccAATTACAGATGTATGGCAACTTTGAAAAGGCATGTTTATTGTAAACATACAGGCACAATTCTTAATTGTGAGCAATGCAGCTACAGCACTCGAAGAAAAGATCTTCTTAACTTGCACATTAAATTAATGCACTCGAACCTCAAAAACACTATACCCTGTAAATACTGCAATGTTAAAGTAAAATGTaaggaatatttaaaaatacatgttaGAAATTACCATTCTGGCCTAGACAGGTCCAATTTTTCCTAG
- Protein Sequence
- NPVNQEISDSSATELEYYQTTLDIASICNENSIDIKENELPAETSVSEDIDLSEFAAQFVKSDNVIADQFDVDPIQISVCPSITDTDTRLILRPRETVGQQNFSTKKKNLLQQTMGGAVNCDICNEKVRHRYSLIKHKNLKHGMNLHFDCEKCGKKFSSFMKINMHIRLMHAANPCKIYGKAVAKSAYQDNLNYHQTKPSTVLESLEPVTCDICKFRAENKFCLVHHINCNHLDVVVEILPICCEMCNKECTTYANFLMHLKNVHGPKLKCDYCDKMFPRYLMAQHIEWHQSGRDITRRSNRHEIKGRTFSKNLQCTECGTKYAQPEMLAWHTENCHGNNPTVRIVEQSSNLHKYQCIFCKTAYYSLLDVITHLKRKHQLRKLPYHCKICHKQFVRNRFLPKHILKCKKIFTNDESSKHVNDSNKLIENHEQLIEEVITSDFEIENHEDKLELEGGPMDCFSRNVQTDVCPPLDGKLSECRVLVHKLLYCELCSFHTDNKTELSTHMKDHLGLNTEEDTMSRNHPSSDHRKLKTLKCTLCGTVYARPEIMDWHTENCHGEYAIVKCVTFGKKKHYQCAICEIGCNDIYSTIQHLFNQHKLRNFPYRCNFCDKQFIYFRSKRRHMLKCKSVNSVTPASLNRNLNVEHQRSIIHVSDIRQKNKFCVKLTESENCIPCLPSSKYFNCLNCEESFFSFTHLLSHCSTKHPGKQVLFCDVCNDELNSYKKYLKHKPEKHIFPCNICFAKFTSTSSLKKHVANMHSGTKFSCKFCNANYRCMATLKRHVYCKHTGTILNCEQCSYSTRRKDLLNLHIKLMHSNLKNTIPCKYCNVKVKCKEYLKIHVRNYHSGLDRSNFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -