Edan015578.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ498155.1:184984-191839[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3 2e+02 2.7 0.6 1 23 321 343 321 343 0.82 2 16 0.06 4.1 8.1 0.3 2 23 377 401 376 401 0.91 3 16 0.0039 0.27 11.8 0.2 3 23 419 440 418 440 0.97 4 16 0.0019 0.13 12.8 0.2 1 21 451 471 451 472 0.93 5 16 0.0056 0.38 11.3 0.2 2 23 479 499 478 499 0.92 6 16 2.9 2e+02 2.8 4.6 1 23 508 530 508 530 0.80 7 16 5.9 4e+02 1.8 0.9 2 23 536 559 535 559 0.91 8 16 0.00023 0.016 15.7 0.4 2 23 575 596 574 596 0.98 9 16 6.8 4.6e+02 1.6 0.1 3 23 620 641 618 641 0.91 10 16 0.00036 0.024 15.1 0.3 2 23 668 688 667 688 0.96 11 16 2.6 1.7e+02 2.9 5.2 1 23 695 717 695 717 0.91 12 16 1.5 1e+02 3.7 0.9 2 23 723 746 722 746 0.95 13 16 0.43 29 5.4 1.6 2 23 762 783 762 783 0.96 14 16 6.8 4.6e+02 1.6 0.1 3 23 807 828 805 828 0.91 15 16 0.00018 0.012 16.1 1.0 1 23 847 869 847 869 0.97 16 16 0.13 8.6 7.1 2.9 1 21 875 895 875 895 0.89
Sequence Information
- Coding Sequence
- TTGAAGAAGATGATGGACTGCCTCATGGTGTGTGTGTGCCGTGCATTAAGAAACTCAATGCTTGCCGGCAGCTCTTGCAGTTTGATTGAAACAACACCATATGATTCTTTGATGTCTCCTGTCTCGAACGTACCTTCCCCTGTTGGGTCTGAGCAAGAGATTTTCTTTGAACTGGACGCTGATGTGATGTTGGAGGACTTCCAATCAGTTCCATTGGAATCAACAGCTGTGATTGTGGCTGATGTGACAGCTGTTGAAGGGGCATGTATATCGTTGGTGGAAGCTACAACTGAGTCAGTAGTTGAAGCCACAGATGAGAAAACAGAGGAAGAAATTGCTGTTCTGGCTGACCATGACAAACTTCAGGAGACCATCACAAGAATCACAGTTGACATGAAGAGGCGCATAAAAATGATCCACGAACGAACCCAAGAAAATGCTGATTTCAACGCTGACCAACACTTTTCCCTACAATTCTTGTGCTTGACCTGCAAGTGTTGGTTCTACTGCAAAGAGGAGATGGTGGCACACTTTGGTAGTTTGCACCCCACAGAACTGAGGCAGTGCTCCTTATGCCCTGAACAAGTGTGTGGGCCTGATGAAATATTCAATAAACACTTGGAATTCCACAAGGCTGTGGACACCAATGATCTTGAACTTATGATGGAACTCACTTCCACACACACTATGGAAATAAAAGACCCAGAATATGCCATCTTATCATTTGGGGAGGTCACTCCTGAGTTCATTGAAAATGCAAAAGACGTTCTTGACTCCAAATTACATGACAAGATCAAACAGTTTGTCCATATTAATCCAGATATGCCATTGAAAGTACTACTTCAACTCCAGAACTTTGTGTTCACTCATGTACCAGATAAGAGAGTAAAGTGTGGGGTGTGTAGCAAATTTATCCGAGATTTTCCCAAACATATGACTGAAGAACATCCGCCTCCGAAACATGCTTGTCCCCATTGTGATGTCATGGTGCAAGACAATGCAGTGAAAGTTCACCTTAAGAAAGCACACAGAGGAGGCAAGTTACTGTATTGCAAAATTTGTGATTCAGAGTACAGAACTACATATTTAGAGCAACCTCACATGATCCCAAAATCAATCAAAGTTGTCACGTGTCCAGTGGAAGCTTGCAAACGTATGTTCCTAAACCAAGATAGATTAACTACACACATGAAGAGAATCCACAAAGTTAAGGAAGTGATTATAAAACCATCTGAACCTTCAGGACCTGTGTTGTGTGATTTATGTGGAAGAGTtctgaaaaataagtttggCCTATTAATGCACTTGAACCGAGCACACTTCTCTGAAAAGAACAATGATAATGCTATACACGTTTGTGACACCTGTGGTAAAGTAGTTGATTCCAAGCTGAAATTAAGAAGGCACTTAATTCGTTGTCAAGGTGAAAAAATACCATGTGATATTTGTGGTAAGAAATTCGTGAGGGATGATATGTACGCACACAAGAAAAGTCACTTACAATTGGATGACTCACAAAAACATGCATGTAAATACTGTGGAAAAAAGTATGCGTTGAGATTCCGATGTAGAGCTCATGAATCGACTCACGAAGGTGCCGAGTTGAAATGTACTATTTGTAAACCCaggcagtacttcaaaactctCAAGGCTGCCACTGAGCACAGGGAAAAACATGAAAGAGGCGAAACATTTACACTTCCACCCCACATGTTAAGCAAACAATGTCCCTTATGTTCCCTGGTGTTAAAGAACCAacgtaatttaaatattcatttgaaaGTTCATGCTAGAAAAGGTTCCGATGCTCAACCTAAGAAAGGTGGACGATTTGGTATCAAAGTTCTGGAGCTGGCTTGCTATGTGTGTCTTGTCAGATATGGGTCCCAGCAACAATTTGATGAACATATGGAAGCATACCATCCACATGGAGTTCCAACTCCTGATCCTCTCAAACTGAAATTAAGAAGGCACTTTATACGTTGTCACGGTGAAAAAATTCCATGTGATATTTGTGGGAAACAATTCGAGAAAGAAACTTTAGCCAGGCACAAGAAAACTCACTTGGACGCTTCAGAACGACATTCATGCAAACATTGTGGCAGGTTATTCATCAAGAGAATTGAATGCGAAGACCATGAATTAACTCATGAAGGTGTTCAGTTGAAATGTACTATCTGCAAACCAATCCGATTCTTCAGAACCATCACCAATGCCGATAGACACAGAGAGAAACATGAAAGAGGTGAAACTTTTCAACCTCCACCCCCTCGGCCAACAGCTCAATGCCAGGTATGTTTCCTCGTGTTAAAATGCAAGGCAAATTTGAGGTTGCATATGCAGGCACATGCTAGAAGAGGTTCCGATGCTCAACCTAAGAAAGGTGGACGATTTAATATCAAAGTTCTGGAGCTGGCTTGCTATGTGTGTCTTGTCAGATATGGGTCCCAGCAACAATTTGATGAACATATGGAAGCATACCATCCACATGGAGTTCCAACTCCTGATCCTCTCAAAGTTTTGGCAAAATCTTTCTCATATCAGTGCTCATACTGCCCTAAAAAGGTGAAGAAGTATGAAAATCTGAAAGACCATGAAGCTTCACATAGAGGGGAGAAGAATTATTCTTGTAAGTACTGCaagaaaaaattctattatGGCAATGAAAGGTCACAACATATGaag
- Protein Sequence
- LKKMMDCLMVCVCRALRNSMLAGSSCSLIETTPYDSLMSPVSNVPSPVGSEQEIFFELDADVMLEDFQSVPLESTAVIVADVTAVEGACISLVEATTESVVEATDEKTEEEIAVLADHDKLQETITRITVDMKRRIKMIHERTQENADFNADQHFSLQFLCLTCKCWFYCKEEMVAHFGSLHPTELRQCSLCPEQVCGPDEIFNKHLEFHKAVDTNDLELMMELTSTHTMEIKDPEYAILSFGEVTPEFIENAKDVLDSKLHDKIKQFVHINPDMPLKVLLQLQNFVFTHVPDKRVKCGVCSKFIRDFPKHMTEEHPPPKHACPHCDVMVQDNAVKVHLKKAHRGGKLLYCKICDSEYRTTYLEQPHMIPKSIKVVTCPVEACKRMFLNQDRLTTHMKRIHKVKEVIIKPSEPSGPVLCDLCGRVLKNKFGLLMHLNRAHFSEKNNDNAIHVCDTCGKVVDSKLKLRRHLIRCQGEKIPCDICGKKFVRDDMYAHKKSHLQLDDSQKHACKYCGKKYALRFRCRAHESTHEGAELKCTICKPRQYFKTLKAATEHREKHERGETFTLPPHMLSKQCPLCSLVLKNQRNLNIHLKVHARKGSDAQPKKGGRFGIKVLELACYVCLVRYGSQQQFDEHMEAYHPHGVPTPDPLKLKLRRHFIRCHGEKIPCDICGKQFEKETLARHKKTHLDASERHSCKHCGRLFIKRIECEDHELTHEGVQLKCTICKPIRFFRTITNADRHREKHERGETFQPPPPRPTAQCQVCFLVLKCKANLRLHMQAHARRGSDAQPKKGGRFNIKVLELACYVCLVRYGSQQQFDEHMEAYHPHGVPTPDPLKVLAKSFSYQCSYCPKKVKKYENLKDHEASHRGEKNYSCKYCKKKFYYGNERSQHMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -