Edan013134.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ497708.1:3218-25854[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.049 3.3 8.3 3.1 1 22 351 372 351 375 0.85 2 18 2.1e-05 0.0014 19.0 2.1 1 23 399 421 399 421 0.98 3 18 0.0039 0.26 11.8 2.7 2 23 431 452 430 452 0.97 4 18 0.082 5.5 7.7 0.4 1 20 458 477 458 478 0.94 5 18 0.0015 0.1 13.1 0.3 4 23 476 496 476 496 0.89 6 18 0.002 0.14 12.7 0.4 2 23 517 538 516 538 0.95 7 18 0.24 16 6.2 0.0 1 23 575 598 575 598 0.95 8 18 6.8 4.6e+02 1.6 2.1 2 23 605 627 604 627 0.95 9 18 0.42 28 5.4 0.1 2 19 636 653 635 654 0.94 10 18 1.1 77 4.1 0.9 1 23 682 705 682 705 0.89 11 18 7 4.7e+02 1.6 4.6 1 10 711 720 711 720 0.95 12 18 4.3e-05 0.0029 18.0 0.1 2 23 739 761 738 761 0.94 13 18 0.024 1.6 9.3 1.1 1 23 767 789 767 789 0.94 14 18 0.24 16 6.2 0.1 3 23 819 840 817 840 0.92 15 18 7 4.7e+02 1.6 0.1 1 9 867 875 867 888 0.78 16 18 0.4 27 5.5 3.3 2 23 925 946 924 946 0.93 17 18 1.7 1.1e+02 3.5 0.3 2 23 977 999 976 999 0.92 18 18 0.056 3.8 8.2 1.7 1 23 1004 1027 1004 1027 0.91
Sequence Information
- Coding Sequence
- atgaaaaatgttgtgGGGCTGACTGCACCTATTGGAAATCAATCGCATGAAACATTCACAGATGGATTGGCGTCTCTCGGCAACGTTTCAATGCGCTCCATAGCCCTCtgctTTGCTCCAGTTCTATTATACACGCCATCATACTCGACGTATGAAAAGCTTGCCGCGTCTCCTCTGTATATATACCCGAACGTGAATACTTGCACACTCATGGGATGCGGAATGAAGAGACAGACGCATTGTCAGGTATGCTTATCTGACAACGGGGAGGAGAAGAATGTTGCCACAGGCTGCATGCTTCGTGTTAATTTGGAGAACTCGTTGAATTTTCAGaATGGTAGAAACAATGAATATTCCATCCGTGCCCTGGTCCATCCAAACATCAGAGCCTGCAGTGTTGTTCTGAATCAGTCGGAGGTGGTGAAGTATTTGGAACAACACTCAAGAGTCAGTGCTTCCTCACAACATGGAACATCTCAAGATTTACTACAGGAAAATGCTGCAGCTTGCCTTGCTGCATTGGAGAAAACAGCCATCAGTGAGTGGGACGCACAAGAAAATTACTGCCCACTTGAGATGAAGATTGAAATTGAGTCAGATCCGCCATCTCCTGACAATTCAAGTTTTGGAAACTGCAGTGCACCATCGTCCCCTGTAGCTGCTTCTCTTGTGTCATCAAGTGACAGTGAAGAGTCTGATGACACCTCTCAAGGTTATTTTGATAAGAAAGTGTCCAGTTCATCGCTAGACACCACTTCTGGCCAGGCAAAAGTTTCAGAGAGTCACAAACTGCAAGATGATGGAATTCCTAGCAGAAGAGAAACCAGGAAATATAATGCTGAAGAAAGACAGGATCAAAAGTGTTCAAAgggaaaaatgcaaaatagatTCCATTTGAGAAGTGCTTCTAAGAGTGTTGATGACTTTGCAATGTGTGATTCCAGCAATGTCTCTGATCTAAACTTTCAAACTTCGTCAGGCGATCCTAAAAATAATACTTGTTCCTCTTCCCAAACCAAAGATGTTGAGAAAGCTGACCATGAGAACAATTACGCTTGCATAGTTTGTGAAACCAAATTTTGTCATTCGTATTCTTTAAATCGTCACTACAGTTCTGtcttacacaaaaataatgttaaggcCGCTACATTAAGGGGCAAACTAAACAAAGAGCTTCACACTTCATTGAGTAACTTTCACTGTGAGATGTGCAATGCAGGTTTCAGACAAAAGTCTGCCTTGAAGACGCACATACAACGCCATCTCAAACAAAATGGAATCACATGGAAAAGATGTGATTTTTGTTCCAAGCAATTTTTCACAAGAAAAGGTCTAACTGAACACATTTTTACACATTTGAGTGCagggaaatatttttgttacagctgcaaaatgattttcagcaCTGAGGTTGATTTAGAGCAGCATGTATGCAATGAATCTTTTGAGAACCAATCCAACTTAAAGGATCATTTGTTCTGGGTGCATATATTCCCAACATTGCCGTACACTGCTTGGGAATTTTGGAAGCCTGAAGTTTTTCTTTTGGAATGTGATTTCTGTAGTGAGACTTTTACTTCAGAATTACAGTTGGAGAAACATACTCTTGAACATTTGAAAAAGTCCAAAACTTCAACTAAAAATGGCAATGAAACTGTAGACAATAGCATTGATGCTGAAATGTGTGAACTTTTGAACACAGATGGTCCGTTTAGGAAATTTTTCCCATGTTTTGCTTGCAGTGAAGAGTTTTCTCCTATCATTGCTTTAAAACAACACATCCTGATGGTTCATAGCGATGCTCAGCAAATGCAGTGCAAACTGTGTGATTCATTGACTTCAAATACTGATAGATATATTGCCCATTTGCAGAAATGTCACAAGTTAAATCCAGGATTGAAACTGCAATGTCCTTATTGTTCTAATGTGTTAAAAACTCCTGAAAAATTTGTTGCACATTTTGGTGGATCCTTACCCCTTGGAGTGAACCTTGCTAATTGCTGTGTTTCAAGCAGCGAAATGAAGAAGAAGGATCACAAAACTTACAGTTGTGAATTCTgtgaaaatgtatacaaatcTTACACGGGCCAGCGCAAACATGTTGCAGATTATCACCCTGATGAGTGGAAacataaatgcaaattttgtggCAAGAAATTCTTATGGCTCTGCAAAGCTAGGAAACATGAACGTTTCTTccacaaagaaaaaattgtttgtccCTACTGTAAGAAAACAGTATCAACACCAGGAGAGTTGAAGCAGCATGTACAGCAAGTTCATGATGGAAAACCAGCATTTTTCTGTGAGAAATGTGACCTTGCGTTCCCAACCCGTGTCAGTCTACAATTTCATACATCAAAACATGATTCATTTGAGTTCACCGTTCATAAAGCTCAAATCTCTAATGAATCGGCGGTCACTGACCAAAAATTATTGGATCATCCCACATCTTGCATAGAATGTGGGTCTGTATTTGCTCTGCTCCCTAAACTTGAAGAGCACATGCAAACTTACCACACACATGAACCAAATCAAAGTCAGTCCAAAAATAGATCCAAAATAGGTGTCAAGCCAGTCAGAgccaacaacaaaatttatgcaTGTAAAAAGTGTGGGGAGCAAACTCTGTTTTATAGTGGATATCTTGCTCATGTAGCCACCTGTAGACCCGATGTGCTGTGTCAAGGTTGTGGAAAACCTCCAAGTTCCATCGCCAAAGTGTTGGAGCACTATACTAGAAACCACATGAACCAGTTACCATTTCCTCTGTACTGCAAACACTGTGACTTCAACTGCGACAACTTAGTGGAGCTCAAGTTGCATGCAACCCAGCACAACCAGCAAATGGTGCACTGCACTCAGTGCCACAGAGATGTAACTGTGGCTCGGTTCAAACGTTGCCACATCCTCACCTGCAAGTCTTCCGTTTGCAGCATCTGCAGCATGGAATGTGGCACCACAGCTGGCTTGTTTCTGCATGTGCAGCAAGACCACGAGACTGGAAACCATTCCTGCCTACTCTGCCTCAACTCTTTTCCCTCGGAATCCAACTTGCAACAACATGTCGCCCACAACCACAGTCAGACATCCTTCCAATGTGATATTTGTAAG
- Protein Sequence
- MKNVVGLTAPIGNQSHETFTDGLASLGNVSMRSIALCFAPVLLYTPSYSTYEKLAASPLYIYPNVNTCTLMGCGMKRQTHCQVCLSDNGEEKNVATGCMLRVNLENSLNFQNGRNNEYSIRALVHPNIRACSVVLNQSEVVKYLEQHSRVSASSQHGTSQDLLQENAAACLAALEKTAISEWDAQENYCPLEMKIEIESDPPSPDNSSFGNCSAPSSPVAASLVSSSDSEESDDTSQGYFDKKVSSSSLDTTSGQAKVSESHKLQDDGIPSRRETRKYNAEERQDQKCSKGKMQNRFHLRSASKSVDDFAMCDSSNVSDLNFQTSSGDPKNNTCSSSQTKDVEKADHENNYACIVCETKFCHSYSLNRHYSSVLHKNNVKAATLRGKLNKELHTSLSNFHCEMCNAGFRQKSALKTHIQRHLKQNGITWKRCDFCSKQFFTRKGLTEHIFTHLSAGKYFCYSCKMIFSTEVDLEQHVCNESFENQSNLKDHLFWVHIFPTLPYTAWEFWKPEVFLLECDFCSETFTSELQLEKHTLEHLKKSKTSTKNGNETVDNSIDAEMCELLNTDGPFRKFFPCFACSEEFSPIIALKQHILMVHSDAQQMQCKLCDSLTSNTDRYIAHLQKCHKLNPGLKLQCPYCSNVLKTPEKFVAHFGGSLPLGVNLANCCVSSSEMKKKDHKTYSCEFCENVYKSYTGQRKHVADYHPDEWKHKCKFCGKKFLWLCKARKHERFFHKEKIVCPYCKKTVSTPGELKQHVQQVHDGKPAFFCEKCDLAFPTRVSLQFHTSKHDSFEFTVHKAQISNESAVTDQKLLDHPTSCIECGSVFALLPKLEEHMQTYHTHEPNQSQSKNRSKIGVKPVRANNKIYACKKCGEQTLFYSGYLAHVATCRPDVLCQGCGKPPSSIAKVLEHYTRNHMNQLPFPLYCKHCDFNCDNLVELKLHATQHNQQMVHCTQCHRDVTVARFKRCHILTCKSSVCSICSMECGTTAGLFLHVQQDHETGNHSCLLCLNSFPSESNLQQHVAHNHSQTSFQCDICK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -