Basic Information

Insect: Ephemera danica
Gene Symbol: -
Assembly: GCA_000507165.2
Location: KZ497974.1:150209-155422[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.1 7 7.3 2.2 1 21 277 297 277 300 0.88

2 13 0.11 7.2 7.3 0.3 3 23 306 326 305 326 0.97

3 13 5.9e-05 0.004 17.5 3.2 1 23 334 356 334 356 0.97

4 13 1.3e-05 0.00091 19.6 1.4 2 23 363 384 362 384 0.97

5 13 0.1 7.1 7.3 4.6 1 23 390 413 390 413 0.95

6 13 5.8 3.9e+02 1.8 0.2 1 9 419 427 419 437 0.85

7 13 0.011 0.74 10.4 2.5 1 23 459 482 459 482 0.96

8 13 2.5e-07 1.7e-05 25.0 1.5 1 23 534 556 534 556 0.98

9 13 2.4 1.6e+02 3.0 1.0 1 22 564 585 564 586 0.75

10 13 7.6e-05 0.0052 17.2 1.8 1 23 592 614 592 614 0.99

11 13 0.00011 0.0072 16.7 1.8 1 23 618 640 618 640 0.98

12 13 0.0087 0.58 10.7 2.9 1 23 646 668 646 668 0.98

13 13 6.1 4.1e+02 1.8 0.1 1 7 674 680 674 695 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.1	7	7.3	2.2	1	21	277	297	277	300	0.88
2	13	0.11	7.2	7.3	0.3	3	23	306	326	305	326	0.97
3	13	5.9e-05	0.004	17.5	3.2	1	23	334	356	334	356	0.97
4	13	1.3e-05	0.00091	19.6	1.4	2	23	363	384	362	384	0.97
5	13	0.1	7.1	7.3	4.6	1	23	390	413	390	413	0.95
6	13	5.8	3.9e+02	1.8	0.2	1	9	419	427	419	437	0.85
7	13	0.011	0.74	10.4	2.5	1	23	459	482	459	482	0.96
8	13	2.5e-07	1.7e-05	25.0	1.5	1	23	534	556	534	556	0.98
9	13	2.4	1.6e+02	3.0	1.0	1	22	564	585	564	586	0.75
10	13	7.6e-05	0.0052	17.2	1.8	1	23	592	614	592	614	0.99
11	13	0.00011	0.0072	16.7	1.8	1	23	618	640	618	640	0.98
12	13	0.0087	0.58	10.7	2.9	1	23	646	668	646	668	0.98
13	13	6.1	4.1e+02	1.8	0.1	1	7	674	680	674	695	0.94

Sequence Information

Coding Sequence: ATGTTAACTTCAAAGGAGCCTCAAGGGGCAAATCCAGCCTGGCTATCTCAATTACCACAACTTGCTCCCAAGCCCAAGTTCTTTCAGCCACAATCTACTGAAAGCAGTCAGTTGGTTTTGTTTCCTCCAGTAATACCAACACTGCCTTCAAGTGTAGTTTCAATGCCATTTAACATAGTTTCATCCATTCCACTACAAAACCATGTTGTAATACAACCAAGCACTTTAAACATGTCTCCTGGTGCTGCAACAGCGTCTTCATTCAAGAACTCAGATGCAGTTGTAGAGGAAGTCTACCTTCCAGTTTCTGATACAGAAGAGATGCTGGAAgaatttgatgatgatgatgatgatgccaTGCCACCCCTTCAAGCATTGTGTCGTATTTGTGCTGAAGCTGCAGCTGCTGAAGGCAAAcaaatgattgaaattttcagcatgGAGGGCAGAGCAAGAAATATTCCAGATTTGATCATGCAGTACTTGCCAATTGAGGTGTTGGAGATGGATCGTCTACCACTAAAAGTGTGTACAACTTGTGTAAACACCTTGGAGACATGCCACGAATTGATTCTGAAATGTAAACTGGGAGATGCTACATTACGTCGGCTGCTTGAACGTGAAGAAAATCGTGAAacATCGCCAATTCCATGTTTCGATGATATATGTGAATCATTTCTTCAGGAAGACTCACAAAATGAAGATTATGTGGAGGATGGAAATGATAATTCTGAAGTGGAAATGATAGAATGCACACATTCAAACTGCAAAACCAAAACTCTTGATGCAAAACTAATGATAAAACATGTCTCAACTATACACAAGCAATATGCTTGTTCAACTTGTTGGAAACATTTCAAGACTATCAAGCAGAGAAATCAACACAAAGTTGAGGTACATGAAGGAATGCTTCTCTGCGATTTGTGTGGTGAATCTTACTTGGGCCGGAAAAGACTGCAAGTACATATGAAAAATCACACTGCTCATTCAGAACGTCaatttaaatgtgatatttGTGGAAAAGGATTTACAAAGAATTGCGAATTAAAACTACATTCATCACGCCACTTAAActccaaaactttaaaatgcCCCAAATGCGACAAGATGTTCTATCATGCAAATGATGTGAGACTTCATATGAAAATTCATGCAGAAAAAGGTAGTTTTAAGTGCAAGGAATGCCTCAGATCATTTACCTGCAAGAGATACTTAGCAGTACATAAAATTAAGAGCCATGTAGAAGAATGGGTTTTCAAATGCAAAACTTGTGAATATAGTGCCAGTAAGTTGAAAGTTATAGCAGAACATTGCCaagaaaaacatgaaattaacgCTGATCAATTGCTTAACCATTGTGACATTTCATCTCCGTTTCAATGTGACACCTGCAAAACTtacttcaataatataattaatctgAGAGAACATAAAACTAAATATCACGGCTCTTGCAAGGTTCGggcaccaagaaaaaaaatgtttacttgtGACGTTTGCGGTGATCTATTCTTATCTCAAATACTATGCACATACCATGTGAAAAATATGCATGGAAATTTTTCTGATTGTATACAGGGTCAGACAGGTGGCGAAAGATTTGAGTGTGCATCATGTCCCAAATcgtttaaaagtaaatattactTAATACAACACATGAGAACTCACAAATCAAGTGGTGTTAAACCATATAAGTGCCAGTACTGTGTGTCTAGTTTTGCTACTGAGCGTGTTCATGCAGACCATGAGCGTATGCATCGAGGAGAAACCCCTTATCAGTGTACATATTGCCTCCAAAGTTTCCCTTCGTCTAATGTGTTACAACGGCACAAGAGATCACACACAAAACCCTTTATTTGTCAATATTGTGGTAAAGGATGTGACTCAAAAAACAGACTCATGGTACACCAACGTGTACACACAGGAGAACGTccatttaaatgcaaattttgtgaGAAAGCATACAAGCAGAAACAAGAAATGGAATTCCATCAACTTACACACAGTATGGAGAAGAAGTATAAATGTTCCATTTGTAACTTTGGAGACAATAGGATGAAATTGGTCATTGATCATGCTGTAACTCAACATGGAATTGAGGAAAATATTGATGATGTGGTTGTTAagcataatttttcataa
Protein Sequence: MLTSKEPQGANPAWLSQLPQLAPKPKFFQPQSTESSQLVLFPPVIPTLPSSVVSMPFNIVSSIPLQNHVVIQPSTLNMSPGAATASSFKNSDAVVEEVYLPVSDTEEMLEEFDDDDDDAMPPLQALCRICAEAAAAEGKQMIEIFSMEGRARNIPDLIMQYLPIEVLEMDRLPLKVCTTCVNTLETCHELILKCKLGDATLRRLLEREENRETSPIPCFDDICESFLQEDSQNEDYVEDGNDNSEVEMIECTHSNCKTKTLDAKLMIKHVSTIHKQYACSTCWKHFKTIKQRNQHKVEVHEGMLLCDLCGESYLGRKRLQVHMKNHTAHSERQFKCDICGKGFTKNCELKLHSSRHLNSKTLKCPKCDKMFYHANDVRLHMKIHAEKGSFKCKECLRSFTCKRYLAVHKIKSHVEEWVFKCKTCEYSASKLKVIAEHCQEKHEINADQLLNHCDISSPFQCDTCKTYFNNIINLREHKTKYHGSCKVRAPRKKMFTCDVCGDLFLSQILCTYHVKNMHGNFSDCIQGQTGGERFECASCPKSFKSKYYLIQHMRTHKSSGVKPYKCQYCVSSFATERVHADHERMHRGETPYQCTYCLQSFPSSNVLQRHKRSHTKPFICQYCGKGCDSKNRLMVHQRVHTGERPFKCKFCEKAYKQKQEMEFHQLTHSMEKKYKCSICNFGDNRMKLVIDHAVTQHGIEENIDDVVVKHNFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -