Edan016953.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ498231.1:81318-87977[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0062 0.42 11.2 0.7 2 23 157 178 156 178 0.96 2 12 0.00046 0.031 14.7 3.0 2 23 203 225 202 225 0.94 3 12 0.043 2.9 8.5 0.9 1 23 243 266 243 266 0.97 4 12 0.047 3.2 8.4 3.0 1 14 273 286 273 293 0.83 5 12 0.00016 0.011 16.2 3.5 2 23 324 346 323 346 0.95 6 12 0.31 21 5.8 5.1 1 20 356 375 356 379 0.89 7 12 0.012 0.8 10.3 0.1 3 23 387 408 385 408 0.93 8 12 0.0038 0.25 11.9 1.8 3 23 415 436 413 436 0.95 9 12 7.5e-05 0.0051 17.2 1.1 2 23 444 466 443 466 0.94 10 12 0.0011 0.071 13.6 2.8 2 23 472 494 471 494 0.95 11 12 0.0005 0.034 14.6 3.0 1 23 502 525 502 525 0.96 12 12 0.13 8.7 7.0 6.2 3 23 532 553 530 553 0.93
Sequence Information
- Coding Sequence
- ATGTTTTACTCACGATGTCTGCTGTGCACACGCACACCTGATGTCACTCCACATCTTCACATTTTCTCTGAAGCTGCCAATCAACTGAAACTGTCCgagaaaatcaacaaatatcTCAACATCCAGGTAAAGCAAGAAATCCCGGACTGTTTGATGACAGAATTGGACGGTCACCAACCAGTCATAGATAGTGCTGCCAACCACAATATGAATAACAGAACAAATGAAATTCCAATGGCCAACCCAAACTGTTCATCATCTGGAGAATTTGTACAACCTAACTCTGCTCGCCACTTGACTGCGGAGAATACAGTGCCATTTGAAGAGGTTTTCATCTCTACGCTTGATATTGAAGAGCATGCAATCAAACAGGAGCTAGGAGAAAATCAGCTGGAATGTTTCTATTGGAATGATGTGATGGAGCCTGTACTGGAGGGCAGACTTCAAGAATCGGTGCCCAAGTTGCTAGAATGTGACTTTTGCACCTTCAACACGGACAACAAAACCGAACTTACAACTCACATGCAAGCTCATCAGACATCAAACACATCAGAAACCAGTTCAACATGGAGCAAAAATCCATCccttgatgatgatgatgaagttAAGTGTCATGAATGTGGAATCAGATATGTGCATCGAGAAATGTTGAAATGGCACATTGAGCTATGTCATGGTGACAATGCTATCGTgagaattgaaaaaattagttacagGCAGTATAACTTTGTGTGTGTTCTTTGTAAATCCGTGTTCAACGAGTTCAAAATGGTAACCAGGCATCTCCGTTCTCAACACCGTCTCATGGACCTACCGTTTCGTTGCAACGTGTGCCATAAAACATTCATAAGCTCAGGCGTTTGTAAGAAACACGAATCCAATTGTTACGGTAGAAAAACCAACATTATCATAAGTCCTATAGAAGTGACTCAGAATGCTTCTTGTTCGAGTATAAACCTCGATGATTTGAAATGTAACGTATGCAACAAAGAATTCAATTCTAAAAACCAGTTCAGAAAACATAATTCCACTTTTCATCCACAAAGAAGAAGAGGAATGATGCATTTTAAGTGTGGACATTGCAATGATTCTTACAATTCGTTTTCTGCTCTCAAAGCGCACTGTCTCAGAAAACATCCAGGAAAATGTATCATAGCGTGCGATGTGTGTGGAACGGAATTCACTTCAAACCTGGGTTACATGGATCATAAAAAGTATGCGCACGGCACTCACGGATTTGGTTGTAACTTATGTTGTGCCACTTTTTCACGTCCAAATAATCTGAaatcacacataaaaaatgtgcaCTCCAAGTTGCAAGAGACTTCGTCATGTAATATCTGTCATGCAAATTTCAAGCGTCCAAAATATTTGCGTACACATATTCTGGAGGCGCATGCATCTCCAATCATTCATTGTATGTATTGTGATTATAGTACACGGAAAAAAGAGTACCTTACAAACCACATAAATTCTAAGCATTTGTTCCACAATCGGCAGATATTTCCATGTACTCTCTGCGGGgatgaattcaaattcaaaacacaTTTACACAGACATATTCGTGGTGTGCATACAGGTACGATGATGCATTGTGAATTTTGTCAGTATAGTACATGCAGAAAAACTGGTCTAATAAAGCACCTTAAATTTAAGCATgttctttttgaaaataattaa
- Protein Sequence
- MFYSRCLLCTRTPDVTPHLHIFSEAANQLKLSEKINKYLNIQVKQEIPDCLMTELDGHQPVIDSAANHNMNNRTNEIPMANPNCSSSGEFVQPNSARHLTAENTVPFEEVFISTLDIEEHAIKQELGENQLECFYWNDVMEPVLEGRLQESVPKLLECDFCTFNTDNKTELTTHMQAHQTSNTSETSSTWSKNPSLDDDDEVKCHECGIRYVHREMLKWHIELCHGDNAIVRIEKISYRQYNFVCVLCKSVFNEFKMVTRHLRSQHRLMDLPFRCNVCHKTFISSGVCKKHESNCYGRKTNIIISPIEVTQNASCSSINLDDLKCNVCNKEFNSKNQFRKHNSTFHPQRRRGMMHFKCGHCNDSYNSFSALKAHCLRKHPGKCIIACDVCGTEFTSNLGYMDHKKYAHGTHGFGCNLCCATFSRPNNLKSHIKNVHSKLQETSSCNICHANFKRPKYLRTHILEAHASPIIHCMYCDYSTRKKEYLTNHINSKHLFHNRQIFPCTLCGDEFKFKTHLHRHIRGVHTGTMMHCEFCQYSTCRKTGLIKHLKFKHVLFENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -