Edan002733.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ephemera danica
Gene Symbol
-
Assembly
GCA_000507165.2
Location
KZ497595.1:545894-553081[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.032 2.2 8.9 0.9 1 20 206 225 206 227 0.95
2 16 0.015 1 10.0 0.3 2 23 267 288 266 288 0.96
3 16 0.17 11 6.7 0.1 6 20 312 326 308 327 0.91
4 16 0.24 16 6.2 1.1 3 23 337 358 336 358 0.94
5 16 7.7 5.2e+02 1.4 0.4 1 23 465 487 465 487 0.86
6 16 1 70 4.2 1.2 2 23 493 514 492 514 0.95
7 16 1.2 83 3.9 0.2 2 23 522 546 521 546 0.86
8 16 0.18 12 6.6 7.0 1 23 550 572 550 572 0.97
9 16 0.087 5.9 7.6 0.9 3 23 580 600 578 601 0.94
10 16 0.19 13 6.5 0.6 2 23 605 626 605 626 0.96
11 16 1.6e-06 0.00011 22.5 0.2 1 23 631 653 631 653 0.97
12 16 0.21 14 6.4 0.8 1 23 659 681 659 681 0.93
13 16 2.2e-05 0.0015 18.9 1.0 1 23 689 711 689 711 0.98
14 16 5.6e-06 0.00038 20.8 1.7 1 23 717 739 717 739 0.99
15 16 1.6e-06 0.00011 22.4 0.9 1 23 745 767 745 767 0.98
16 16 0.0016 0.11 13.0 3.4 1 23 773 796 773 796 0.94

Sequence Information

Coding Sequence
ATGAGTGCTCAGGAGGACCACCAGTACACCTCGGGGAAAAAGAAACCGCAAAGTCAAGCGAAGCAAACCAGTGTGAACAACAGCATGTTCAAGGGCAGAAGATGTTTCATTTGCAACGAGCCTCTGAAAGGGAATACCTGCCAGCTGTCCAGGACCAATACCAAGTACACCAACACTCCGTTCTCCAAGTCCTTGAATGATGTTATGGGCGAGTCATTCGAAGTGATTATTGGAGATGCAGACAAGTCCTGTCAACGGTGTGCAACTTTGGTTCAGCAACGTGACCGACTGAACAAAGACCTGGCTGGAGTGACGAAAACCATAAAGAACTTTCTCACCAGGAAATATACATTGATGAGCTATGCAAACCGCCATGCTGCAGCAGCTATCGATGCCCAATCTGGACAACAAGTGCAAGTTGCATCCATGGCATCTCCACTGCCTGCAGAAGGCAATTCCAGGAAGGTTGGTGCTCAACAAAGCCTGTTACTGAAGAATGATGCTGCAAATTCTCAATCGAAGAATCCCCAGAAGCCATGCATCCTGATTCTTGGCAAAGTGGCCCCTAAAATTCAGAACACCCCAGTGGTTCCCATCAACAATCGTGTGGAACTGTACCAATGTGTCCAGTGCCAACACATAACTACAAACCCAAATGAACTGAAGAGCCATGTTTGTGCCAAAACTGCAACTTTCAACAAGCCTGTGACAGTTGTCAAGGAAACTTCAGATGCTCAACCTAAAAAAGTTTCTGTGAAAAGACCAATCAAAATTGTAGCGAAGAAAGTGGAAAAGTTGACATGTACCCTATGTGATCTCAGCTTTCTAACCAGGGAAGAACTGGATTCTCACCAGGAAATGCACCTCTCTGAATTGACAAACTTCCCACGCTTTGAGGAACAAGAACTGAACCAATCCTGGGTTTGCATATCGTGTAACGAGACATTCACGACCGTGGAGAGTCTGACCACTCATCTGGCACCTGTCCTCAAAATCAACGCCAACCACTGCAGTTCGTGCAACCTCCAGTTCATGTCCAAAGAAGATTTCAATGACCACGTTGCGTCCGTGCATCAGACGGATGACGGAGCAAGCACGGATGCAAATCTCATCATGAAGTTGACCTACGTTTGTTCCTGCTGTCAGTGTGAACTGATGGACTATAAGGATTTTAGTCAGCATCGGGAAGACCACATATCAAGAGCAAAAATCTGCAAGAAAAGTGTAGAGTTGAATCCAGAGGGATGCAGTGAAGAAATGGATCACGACTATGCCATGGATATGAACGAGCCTACAACATCTCAGTCCTTGTTTTCTACTTCGGACAAAATTAACAAAGCCACAAAAGGAGATGGGAATCCAGTTTTAAGTGCAGGGTCTAAAAAATCTGTGTACGAATGTGGAATGTGCTCGACAAGAGAAGATACCATAGAGAAGTTGatggaacattttaaaatgcacAAATCGTCTAAAATCGTGTGTAAACACTGTCATATTGTGCAGCCCAGTGTAAACGCCCTCTCGAAGCATCTGCAGTACCACACCCAGTCTGGACAAGGATTAGAGTGTCAAATGTGCACACCCAGCATTTCACTGAGCAACAAGGATCTGTTCATGAAACATATGGCTGACTTACACAAGATGAAACATCAGTGCAACTGTTGTGGAGAACAGTTCAGGTTCCACAGAGAGCTCACGGTCCATCAGAACCTTCACCCAGAACTGAGAAAGTTCGGCTGCCCCAAGTGTGGACTGAGGTACCTGAAGGTCACTCAATTGCAGAAGCATATCGAGTTGCACCATAGAGATCCCAAGTGTCGACAATGTGGCAAGTTGATCAAAGATCCACTCAAGTTACGTCAACACGAGGCAAGACACAGACATGAGAAGTTCCCGTGCACCAAGTGTGAGAGAATTTTCAAAACACCCAGTGGCCTGAGAAATCACATGGCAATACACACGGGAGAGTACAAGTACCGCTGTGACTCGTGTGATCGTGGCTTCATGAACAGGAACATTTTCATAGAGCATACAAACAACCATCTGGAGACCCCAAAACCACTGTATAAGTGCGACATTTGTAACAAGAACTTCTTCTATCAAGGCTCGTTGTGGATCCATCGCAAGTGGcacaaaaatccatatccatacgagtgtaaactgTGTGGCAAGAAGTTAAGGCATGCCTCGGTGCTGCAGGTCCATATGAGAAAACACCGAGGTGAGCGACCGTACAAGTGTCCCTACTGCCCTCTGAACTTCAACTCCCCAAGTACCTTCAAGCGCCACCTCATGCTGCACACGGGAGAGTATGCGTACAAGTGTGACGAGTGCAACAAGGGGTTCACCGGCAAAAACAAGTTCCAGTTGCATCGTCACCAAGTGCATGGAGAAGCAATGCCGAAGAAGCAGGCAATGTCGGAGAAAGACTTCAAAGTGAACGTGCCGGTCAAATCCTTGATCCAAGAGAGTTCCACACTAGACGGCCACCCAGCTGCCTACATTGTTGAGAGTATGGGCAATCCAGATACAAGCAACGATGACGACTCCATGGCTCCGAGAGTCATTGAGGTGGTCATCAACGAAGAGCAGCAGGCTGTGTCGTCCATTACGTTGCTTGGCGATTCTGCTCGCTGGGCGTAA
Protein Sequence
MSAQEDHQYTSGKKKPQSQAKQTSVNNSMFKGRRCFICNEPLKGNTCQLSRTNTKYTNTPFSKSLNDVMGESFEVIIGDADKSCQRCATLVQQRDRLNKDLAGVTKTIKNFLTRKYTLMSYANRHAAAAIDAQSGQQVQVASMASPLPAEGNSRKVGAQQSLLLKNDAANSQSKNPQKPCILILGKVAPKIQNTPVVPINNRVELYQCVQCQHITTNPNELKSHVCAKTATFNKPVTVVKETSDAQPKKVSVKRPIKIVAKKVEKLTCTLCDLSFLTREELDSHQEMHLSELTNFPRFEEQELNQSWVCISCNETFTTVESLTTHLAPVLKINANHCSSCNLQFMSKEDFNDHVASVHQTDDGASTDANLIMKLTYVCSCCQCELMDYKDFSQHREDHISRAKICKKSVELNPEGCSEEMDHDYAMDMNEPTTSQSLFSTSDKINKATKGDGNPVLSAGSKKSVYECGMCSTREDTIEKLMEHFKMHKSSKIVCKHCHIVQPSVNALSKHLQYHTQSGQGLECQMCTPSISLSNKDLFMKHMADLHKMKHQCNCCGEQFRFHRELTVHQNLHPELRKFGCPKCGLRYLKVTQLQKHIELHHRDPKCRQCGKLIKDPLKLRQHEARHRHEKFPCTKCERIFKTPSGLRNHMAIHTGEYKYRCDSCDRGFMNRNIFIEHTNNHLETPKPLYKCDICNKNFFYQGSLWIHRKWHKNPYPYECKLCGKKLRHASVLQVHMRKHRGERPYKCPYCPLNFNSPSTFKRHLMLHTGEYAYKCDECNKGFTGKNKFQLHRHQVHGEAMPKKQAMSEKDFKVNVPVKSLIQESSTLDGHPAAYIVESMGNPDTSNDDDSMAPRVIEVVINEEQQAVSSITLLGDSARWA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-