Edan008797.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ497707.1:1080431-1086685[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0019 0.13 12.8 1.4 1 23 35 58 35 58 0.95 2 17 0.0027 0.18 12.3 0.9 1 23 69 92 69 92 0.95 3 17 1.4 93 3.8 0.2 2 13 100 111 99 113 0.88 4 17 0.0088 0.59 10.7 0.2 2 23 129 151 128 151 0.92 5 17 0.003 0.2 12.2 3.4 1 23 163 186 163 186 0.93 6 17 1.4e-05 0.00096 19.5 0.8 1 23 228 251 228 251 0.97 7 17 0.013 0.87 10.2 0.4 2 20 259 277 258 279 0.93 8 17 0.0019 0.13 12.8 2.1 1 23 332 355 332 355 0.96 9 17 0.0016 0.11 13.1 1.2 1 23 401 424 401 424 0.92 10 17 4 2.7e+02 2.3 0.5 9 23 447 462 441 462 0.84 11 17 0.011 0.71 10.5 0.6 1 23 475 498 475 498 0.97 12 17 0.00058 0.039 14.4 1.5 1 23 540 563 540 563 0.96 13 17 0.013 0.88 10.2 3.4 1 23 632 655 632 655 0.96 14 17 5.4 3.7e+02 1.9 0.2 1 10 662 671 662 674 0.85 15 17 0.0029 0.19 12.2 1.6 1 23 700 723 700 723 0.95 16 17 0.0055 0.37 11.4 1.7 3 23 780 801 780 801 0.95 17 17 0.0059 0.4 11.3 3.2 2 23 809 831 808 831 0.94
Sequence Information
- Coding Sequence
- ATGTATGAACCCTCTATCGTAGATGTTAatcGGTTCATCTTGGTAGGGGGCAGTTATGAAACCATCCTCATTGGCTCTCAGGATACGAATGCAGCAAGAGAGTTTCAGTGCGTCTTCTGCGATAAATCGCATACCAGCAAGGAAGAGTTGATCACTCATATGAATGATGACCATTTCGATTTAGCAAACAAACGGTCACCTAGATTCTTTTGTGAGATCTGTGCGAAGGGATACATTCATAAACGTGATCTTCTTGCGCACACCAAAAATATCCATGGAGAATTAGCTAAACCTATTGAATGTTCCGATTGTCGACGCGTTTATAAAAATGCTAATAaatCGGGACGTTTTGGAGAGATGAAACTGCTACAAACAGGCCGACTTCAGTGCGTATTTTGCACACTCGAGTTTGTCAAGAAAACTGCGTTAGTCAGGCACATGACTGCTATCCATTCTATTCAAATTGCTAGACCACCTCGTCCTCTGTTTCCTTGCATTCACTGTGGAAAGTCGTATGTTCACAAGCGTGACTTGTCGTGGCACACAAAAAACACCCATGGAAAATTCACCAATCCTGTGCAGTGTGCAGGCTGTGGTAGCATTTATAAAAGGTTCGTCCAACATTCAAGGAAAGTTCGATTTCGATCGCCGAAGGGAATTCTGCACCCCGAAGCTGAGCGATACCAATGCAGCTACTGCGAAAAGTCGTACCAATACAAAGGCGACTTGACTATTCATATTAAGAATATTCACGGCGAAGATTCAATGCCAGTTAAATGCCAATATTGTTtgagaatttataaaaacagtAATACTTTGCGAGCTCACTTCAAtgaatattataataaaacaactcaagctcaattttcaatattttatttgcgaTACTACGTTGAAGGACTGAAATTCAGGTGTGTTTTTACAGGGTTGGCCCGGCCGTCGTGTCATAGACTCACACAACAGGAGATTCAGGAGCAAGCACTTATCAGGCAATTCCATTGCACAGATTGCGACAAGGCGTACTTATATAAGCGTGATTTGCAAAGTCACATCAAGAACATTCATGGTGTACTTGCAACACCTACACCTTGTCCGAAATGTCTCAGAATCTATAAGAATCCAAATAGATTTCCGGTATTCGAGGCGAAGGCACTACTGGGCAGACCCTCCCGCGGCAACAACAACTTGGACTCTCCTCGCTACTGTTGCACCAAGTGTGGCAAGTCGTACTCGATGTTACGCGGTCTCGAGATCCATGAGTCAAACGTGCACGACGTGATTGGTACTTCCTGGAAATCATCGTCTCGTCGTCAGTGGGAAAAGTGTCGCGTTTGTTCCTCGTACATCTCGAAAACCAATATGGCACGTCACATGAGTAATGCTCATGGGTCATCTCCGCGTGTGGTAACCCGGAGCAGAAAATATCCTTGCCTTTTGTGCTCCCGCTCTTACCTTAGGAAGGACAATCTGGCGTACCACGTGAGGAACACTCACGGCGCGGACGCGCAACCGGTCTTGTGCAGCGTCTGCAACCGCTTGGAGATGTACCCTAAATCACAGCCGCGACACAGATCGGTGCGCCGCTCCACCGACGCTCATGGTGCTCAATCTAAGTATTTTGCATGTCCCCATTGCGATCGTTCATACCTTAGGCGAGATAACTTGGGACAACACATTAAGAATTTCCACGGAGAATACGCTCGCCCTTTCTGCTGTAGTCTGTGTCGTAAAGTGTGCAGGAATAAGAACGCACTACGCTGTCACATCTACCACATACATAGAAACGAGAAAAAGGGGAtcAGTGTCAAGTTAGTAGCAACTGAGGAGTGCTATACTCTCTTTGCAGGCCGTCGTTACATGATGATGCGAACGGGGGATGGCAAAAGCGCGGAGCACGAGTGCAATGTATGCGGCAGACGGTACAAGTGGCTGACGAGTTTGATGCACCATCGACGTAACGTACACGGCAGAGATGCTGGCGTTTTCCACTGTAATGAATGCGATTACGTCTCGAGAGGAGCGTGGGCCACCTGGGCAGTGGAGGACGTGTCGTGTCAAGCTGGTGGTGCCGCCTTCCTCCCCCCTCTCGTAATGCGGTACAAGTGTCAGTTTTGTCCCAAGACATACTCTCTGCAACGAAACGTGCAATTGCACGAGCAAAACACCCACGGCGAGGACGCAAGACCGTTCATATGCGACACTTGTGGTTCAGTGCACAAAAACAGGCAGGCTTTACGATGTCACATTAATGAGAAGCACAGGGGTAGAGTTCGCATTAAAATTCGCGGCCTTGGAGCCCGGAACTGTGCCAACATAATAATTGGTACGCGACTTGGCTGCTCAATGTGTACCAAGTCATTCTTATCCAACTCTGATCTCAATCGGCATTTTAACAACATTCACGGTAAACTCGCCAGGCCTGTAGTTTGTGACATTTGCAACAGGAAGTACAAAAATCCTGAGAGTTGGAGGCACCACTCTTGCATGAGACATAAAAAAGATTAA
- Protein Sequence
- MYEPSIVDVNRFILVGGSYETILIGSQDTNAAREFQCVFCDKSHTSKEELITHMNDDHFDLANKRSPRFFCEICAKGYIHKRDLLAHTKNIHGELAKPIECSDCRRVYKNANKSGRFGEMKLLQTGRLQCVFCTLEFVKKTALVRHMTAIHSIQIARPPRPLFPCIHCGKSYVHKRDLSWHTKNTHGKFTNPVQCAGCGSIYKRFVQHSRKVRFRSPKGILHPEAERYQCSYCEKSYQYKGDLTIHIKNIHGEDSMPVKCQYCLRIYKNSNTLRAHFNEYYNKTTQAQFSIFYLRYYVEGLKFRCVFTGLARPSCHRLTQQEIQEQALIRQFHCTDCDKAYLYKRDLQSHIKNIHGVLATPTPCPKCLRIYKNPNRFPVFEAKALLGRPSRGNNNLDSPRYCCTKCGKSYSMLRGLEIHESNVHDVIGTSWKSSSRRQWEKCRVCSSYISKTNMARHMSNAHGSSPRVVTRSRKYPCLLCSRSYLRKDNLAYHVRNTHGADAQPVLCSVCNRLEMYPKSQPRHRSVRRSTDAHGAQSKYFACPHCDRSYLRRDNLGQHIKNFHGEYARPFCCSLCRKVCRNKNALRCHIYHIHRNEKKGISVKLVATEECYTLFAGRRYMMMRTGDGKSAEHECNVCGRRYKWLTSLMHHRRNVHGRDAGVFHCNECDYVSRGAWATWAVEDVSCQAGGAAFLPPLVMRYKCQFCPKTYSLQRNVQLHEQNTHGEDARPFICDTCGSVHKNRQALRCHINEKHRGRVRIKIRGLGARNCANIIIGTRLGCSMCTKSFLSNSDLNRHFNNIHGKLARPVVCDICNRKYKNPESWRHHSCMRHKKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -