Edan014251.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ497748.1:1198125-1205409[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0039 0.26 11.8 4.0 1 23 321 344 321 344 0.97 2 9 1.1e-05 0.00075 19.8 1.1 1 23 368 391 368 391 0.96 3 9 1.7e-06 0.00011 22.4 0.4 1 23 406 429 406 429 0.94 4 9 0.00019 0.013 16.0 1.6 1 23 462 485 462 485 0.96 5 9 0.038 2.6 8.7 0.7 2 23 505 527 504 527 0.95 6 9 0.00031 0.021 15.3 1.1 1 23 550 573 550 573 0.94 7 9 0.00016 0.011 16.2 2.3 1 23 608 631 608 631 0.96 8 9 0.001 0.068 13.7 5.6 1 23 641 664 641 664 0.95 9 9 0.16 11 6.7 4.6 2 23 672 693 671 694 0.94
Sequence Information
- Coding Sequence
- ATGATGGCAGACGATCCTCAAGCTGATTGTTTCACCTTTCGAAGCAATCGATATGAAGATTCGTTGGTTTGTGGACTTCAAAGTCTACTTGTCGATAAAGATCTCATCGATGTGACCTTTGTATGTGAAGGAGGGGAACGTGTCAAAGGACATAAAGTTATATTTGGTGCTTGTAGCCCAtactttaaaacaatatttgcagaaaaccCAGGTAAACACCCGATTGTAGTGATGCCAGACGTGAAGATTAACCACTTCCAATCCATCCTGGAATTCATCTACATGGGAGAGGTGAACGTGAAGGCTCCAGACACAATGGAATTCCTGGACACTGCAGAAATGTTGAAGATCAAAGGCCTCACTCTAATGCTGCACGATGAAAAGGATGCTGTAGTAATGAACGTGCCAAATCCAGAACTGGCTGAAGAAGTTGTTATGGAAGGAGCTATGGAGGAGGTGGTGACCAGTGAGCATGTTCTTCCCGATGGTGATGATGATGAAGATGAGGAGGAAGAGGAAGGGAATTGTATTCCCAAGCTTCAAGATGGGATGCCTAGAGTAGAGCCCATAGAAATGCCTAAACTGGAACCACGAGATTCTACTGAAACTCCCATGCTGGATTCCTCCCAAGACGATATTATGTCCTCCGAAGAGGAGAGCAAGGAAAACTGTCTCTCAGATAATGATGCACAGGAGCCAGAAGATCCCAATGTTAGACGAAGTCATCGTAAACGGATCCGGTCCAAACGATTGCCTTCTCCTGACATGAAACTTCCAGGATTGCCACCAGTAATGAAGATAAAATCAGAGGACACTAAACCATTCCTTACTGATATGTATAAACAAATCCTACCTACCCAGAATCAAGAGCCAATCATTGCTCACCTTACTGCCACAGAAAGTCAATTTGTACAAGAAAATCTCAGGACTGACCCTCCTGTCAAGAGGACGAAAGGAAGATTTAGCTGCCAGGTTTGTGGTAGATCATACCTTCAGAGAAGTCACGTAACCCGCCATCATCAAAGTGCACATCCCAATATGCCGTTACCTCCATTTGCATCACAAGGTCAAGCAAAGATGATCAACACTTCTGAAGGCGAGTATTCCTGCCTGAAATGTGGAAAACGATTTAACCGACTACGACTTCTGAAACAACATTTAAGTGTGGTGCATCGCAAACATCAACGACAGCGTGACCCAGGTTCTCAGCAAAGGTTTGCCTGCCCCAAATGTAACAAATCATTTACTGAGCAAGCAAATCTAAAAGTCCACTTCAGAGCCGTCCATCGCAGAATTTCCAGTTCACCGAGAATCAACTCACTGCAGACAAAAAAGAAGGTTGTTGAGGAGAATCATAATGGAGATGAAGATGAAGCAAAAGTGTTCAAATGTCCCGAGTGTCCTAGAACATTTGCTAGACGTAATTATATCAGTCAGCACGTGAAACATGTGCATAGTGAAATTTACTATGAAGTTGATGATATCGTTCGTGAGAGCTCCTCTCATGGTGTGAAATGTCCTAAATGCTCCAAATGGTTTTCATTGCTGAGATATTTAAGATCACATTACACAGTGATGCATCGCTACAGTTCAGACAATGTGGTTCAGAACAATACAAAAAAGGTTAAATCTGAAGGTGAACACGAGTACAAATGCCCATCTTGTAAAAAGGTATTTCCAAGTCAACACGATGTTGAGGAACACTTTAAGGAGATCCACCAAGCAAAGGAAGAACAAGACGACAATGCATCTTCGTCGAGCAGTGACGAGGACAATGACGGTGACAACGATGATGACtctgaagaagaagaagatacCTCACACAGATGTGAAGAATGTGGCCGAGATTTCGTATTGAAAGTGCATCTCATCAATCATCGTCGTGCAAAACATCCAGAAACAGAAGTGAGTGGAGGTTCATACAAATgtcaaaaatgtacaaaatcATATCAAAATAGAGTACATCTAATGCGACATGTTCATAACATTCATGGTAAATATTCTCACAAAATGGTTTGCAAATTGTGTAAGAGAGTATGTATGAATTTGAACTCCCTGAGATCTCATACTTTTGTACATCACCCTGGCCATCGCGTCAACAAAGAGGATTACATGTAA
- Protein Sequence
- MMADDPQADCFTFRSNRYEDSLVCGLQSLLVDKDLIDVTFVCEGGERVKGHKVIFGACSPYFKTIFAENPGKHPIVVMPDVKINHFQSILEFIYMGEVNVKAPDTMEFLDTAEMLKIKGLTLMLHDEKDAVVMNVPNPELAEEVVMEGAMEEVVTSEHVLPDGDDDEDEEEEEGNCIPKLQDGMPRVEPIEMPKLEPRDSTETPMLDSSQDDIMSSEEESKENCLSDNDAQEPEDPNVRRSHRKRIRSKRLPSPDMKLPGLPPVMKIKSEDTKPFLTDMYKQILPTQNQEPIIAHLTATESQFVQENLRTDPPVKRTKGRFSCQVCGRSYLQRSHVTRHHQSAHPNMPLPPFASQGQAKMINTSEGEYSCLKCGKRFNRLRLLKQHLSVVHRKHQRQRDPGSQQRFACPKCNKSFTEQANLKVHFRAVHRRISSSPRINSLQTKKKVVEENHNGDEDEAKVFKCPECPRTFARRNYISQHVKHVHSEIYYEVDDIVRESSSHGVKCPKCSKWFSLLRYLRSHYTVMHRYSSDNVVQNNTKKVKSEGEHEYKCPSCKKVFPSQHDVEEHFKEIHQAKEEQDDNASSSSSDEDNDGDNDDDSEEEEDTSHRCEECGRDFVLKVHLINHRRAKHPETEVSGGSYKCQKCTKSYQNRVHLMRHVHNIHGKYSHKMVCKLCKRVCMNLNSLRSHTFVHHPGHRVNKEDYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00651059;
- 90% Identity
- iTF_00651059;
- 80% Identity
- iTF_00651059;