Edan005107.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ephemera danica
Gene Symbol
-
Assembly
GCA_000507165.2
Location
KZ497694.1:409843-415762[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.7 5.2e+02 1.4 0.3 5 16 199 210 197 211 0.89
2 16 0.0064 0.43 11.1 0.2 3 23 237 258 236 258 0.92
3 16 0.0015 0.1 13.1 0.2 1 23 260 283 260 283 0.94
4 16 0.81 54 4.5 1.9 2 23 303 325 302 325 0.88
5 16 0.15 10 6.8 0.2 1 23 328 351 328 351 0.93
6 16 0.0017 0.12 12.9 0.7 2 23 354 376 353 376 0.95
7 16 1 70 4.2 5.3 1 20 396 415 396 419 0.88
8 16 1.8 1.2e+02 3.4 0.5 1 19 422 440 422 445 0.81
9 16 5.9 4e+02 1.8 0.4 3 23 449 470 448 470 0.91
10 16 0.019 1.2 9.7 1.3 1 23 476 498 476 498 0.97
11 16 0.0062 0.42 11.2 4.3 1 21 505 525 505 528 0.94
12 16 7.6e-07 5.1e-05 23.5 0.7 1 23 533 555 533 555 0.97
13 16 5.4e-06 0.00036 20.8 0.7 1 23 561 583 561 583 0.99
14 16 0.00044 0.03 14.8 2.5 1 23 593 616 593 616 0.97
15 16 0.00041 0.028 14.9 0.4 1 23 623 645 623 645 0.98
16 16 0.027 1.8 9.2 0.5 1 23 664 686 664 686 0.95

Sequence Information

Coding Sequence
ATGGAGCAGAACAATTCCACGCAATTGCAAGAAAATGCACCAGCGAGTGTTTCAAGTATTATGTTGTCACTTTCGTCAGAAGATGAAATTTTGGATGTTTTTGAAGATGATTCCCTGGCCTGTGTGACGGACaatgttgataaaaatttggaGAACATCTGCCGAATTTGCACCAACACAACATCagatgattatatttatatatttggaCCTGAGAGTGAAGAAAATCAACTTctagtaaaaatgaaacaacattTACCAATTAGGTTGCCAAGGAAGGGTGACCAAATGCCTGAAAAAGTATGTGGATTGTGTATGGAGAAGCTGAATTTGTGCCATTCAGTAGCAGAATTATCTGCCAGGTCAGACAGCATCATCAGGAAAACACTTGGACTTTCTAATCCAGGAAAGAAAAGAAAGTTTGGCCAACCAAATGCTGCTTCCTCCCAGAAAGGTAGTGAATTGCAGCCTGAAAATGAGGAAATCCCGCCAAATTCTGAAGTTGGAGCTTCCAGTTCCTCTGATGCAGTGAGATAttcaaaaagaagaaaagtgCTGGACTCTCGGAAAGGTATGAACTCCACAAAGCCAGTGAAATGCAACAAGTCtagcacaagaaaaaaatacctattttgtaaattttgtgacCTGGTTATGAGCCAAGACGTTCTTCAAAAACATTGCTTTGAAATCCATGCCAAATCATTGTGTTCCATTTGCAATGTGACATTTGACAACGAGCAGGATTTGACGAATCACAACCAAGAAATTCACACATATTCTTGTACTTTATGTGGGATTTCGTTTACTGGGAAAAAATTGCTAGTGGGACACAATAACTCGGAACACAGAAAATTCAAACCTCCTTTATTTATTGGTCGCAAGATCAACAGCTCTGAAAAAATGTACTGTGCCCTGTGCAATGATTCatttaattcaagtttttaCATGAAGAAGCACCATTTTGCAGTCCATAGAAAATATAGTTGTGACATTTGCTTAGAAATCTTCTCAGACTTTGAAACCCAAGTCCAACATACACAACAAGTCCATCAATTGCCATGCAAATTTTGCCCATCTGTGTTTTATTCGTCAGTGAAATTAAACAAACATGTTAAAATGAAACACAGAATTAAGGAACTTAGCTATAAAAGTCAATACACTATTAGTTCCCCATTTGATATTTACAAGTgcaaaacttgcaacaaaagtTTGCAGTCCAAAATGTTTGTGAAACGTCATAATTATTGGTGTCATAAAATTTACACCTGCGATTTTTGTTTACAAGAGTTTAAAGATGCTGATACTGAAAACCAACATTTTGAAGAGGTGCATGGCAAACACTGCTATTTCTGCGACTCACAACTGGataatttggaacttttaatcaCACATTTACAAGCTGCTCACTCGGACAAGAATCCATTTTCGTGTGAACATTGCGGGCAGCTAATATCTGACAGGGTAGAACTACATCTGCATCGAATCATGCACAAAAATGGTGCGACTCGGCACAAGTGCCAACAGTGTGGCAAGGGGTTTACCACCAAACAAATTCTCTCAAACCACATGAAATGCATTCACGATGAGCATGACTTTGCCTGTGACATATGTGGAAAAACATTTGCTTTCGAAGGTGGGTTAAAGAGACATATGCATACTCACACCAATAAAAAGTCTTACAAATGCCTTGATTGTGGAAAAGCATTCATTGATTTCAATAGATTGTCTCGCCACATACAGACACATGGACCTACGCACCCCACAGATAAAAAATTCTCTTGCAGTGTGTGCAGTGTTTCATTCTTTAAGAAGCGCAACTTAAACAATCACACTAAATCCCTGCATTCTGCTCTAGCAGCATATTATAGTTGTGCCATTTGCCATGTGAGTTTTGCTACAGAAAGTGCAGTGACTAACCATCTGACCAGCCATACACTTATAGAGTTGTCCAAAGTTCCCCGGCCGTATACAAAACAGAACAATACATATACATGTGACATTTGTATTCGGGTATTCTCTACAAAACATGCAATACTTGGCCACATCACTCAACATCTAAAATCGAAAGAAGAGAAATTGGTCGAGAAGAAGAACATTAAGAAACTTTGTACTCTCAGCACACGggaaattttggaaaaaattaagCAGGAGTCGGCTacgaaaaaaatgtttgtgaatGGAGATCTGGTTAGTGTGCCCAGGAATAAAATCCCCTCCAATCCTTTTCTCCGGGCACCACCAACGCCCATAACTAAAAAACAATTGTATCGGCCATATAAATGA
Protein Sequence
MEQNNSTQLQENAPASVSSIMLSLSSEDEILDVFEDDSLACVTDNVDKNLENICRICTNTTSDDYIYIFGPESEENQLLVKMKQHLPIRLPRKGDQMPEKVCGLCMEKLNLCHSVAELSARSDSIIRKTLGLSNPGKKRKFGQPNAASSQKGSELQPENEEIPPNSEVGASSSSDAVRYSKRRKVLDSRKGMNSTKPVKCNKSSTRKKYLFCKFCDLVMSQDVLQKHCFEIHAKSLCSICNVTFDNEQDLTNHNQEIHTYSCTLCGISFTGKKLLVGHNNSEHRKFKPPLFIGRKINSSEKMYCALCNDSFNSSFYMKKHHFAVHRKYSCDICLEIFSDFETQVQHTQQVHQLPCKFCPSVFYSSVKLNKHVKMKHRIKELSYKSQYTISSPFDIYKCKTCNKSLQSKMFVKRHNYWCHKIYTCDFCLQEFKDADTENQHFEEVHGKHCYFCDSQLDNLELLITHLQAAHSDKNPFSCEHCGQLISDRVELHLHRIMHKNGATRHKCQQCGKGFTTKQILSNHMKCIHDEHDFACDICGKTFAFEGGLKRHMHTHTNKKSYKCLDCGKAFIDFNRLSRHIQTHGPTHPTDKKFSCSVCSVSFFKKRNLNNHTKSLHSALAAYYSCAICHVSFATESAVTNHLTSHTLIELSKVPRPYTKQNNTYTCDICIRVFSTKHAILGHITQHLKSKEEKLVEKKNIKKLCTLSTREILEKIKQESATKKMFVNGDLVSVPRNKIPSNPFLRAPPTPITKKQLYRPYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-