Edan001357.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ497829.1:2194-17986[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00045 0.03 14.8 0.0 1 20 170 189 170 190 0.95 2 15 4.3e-05 0.0029 18.0 0.7 1 23 205 228 205 228 0.93 3 15 0.0022 0.15 12.6 0.5 2 23 264 286 263 286 0.95 4 15 0.017 1.1 9.8 1.4 2 23 305 327 305 327 0.97 5 15 0.36 24 5.6 0.1 5 23 334 353 331 353 0.88 6 15 1.2e-05 0.00084 19.7 1.3 1 23 383 405 383 405 0.96 7 15 0.0011 0.075 13.5 3.6 1 23 430 452 430 452 0.96 8 15 0.0042 0.29 11.7 0.4 3 23 531 552 530 552 0.96 9 15 0.00044 0.029 14.8 1.9 2 23 619 641 618 641 0.91 10 15 2.6e-05 0.0018 18.6 0.3 1 23 648 670 648 670 0.96 11 15 4 2.7e+02 2.4 0.3 3 16 702 714 701 721 0.71 12 15 6 4.1e+02 1.8 0.9 3 23 771 792 770 792 0.90 13 15 0.36 24 5.6 0.4 1 19 798 816 798 820 0.93 14 15 0.06 4 8.1 4.4 3 21 827 845 825 849 0.90 15 15 2.2 1.5e+02 3.2 0.8 1 23 882 904 882 904 0.90
Sequence Information
- Coding Sequence
- ATGATGGACCGGTACGCCAAGGCATGCAGAATTTGCCTCAAGGAAGATGGCATCAGTGTGCCTATTTTTGGCGAGGAAGGGCGTTATCGAATGGTAGCAGAAAAAATACGAGATTGCCTCAATATTCCAGCATACCACAATGATCCACTACCTAAAAAGATATGTAACCGATGTTTCTACAAATTGGATGTGGCATCTGAATTAAAAGTGCTTAGTCAGCGTTCCAGTGCCATTTTTGTGCagatcttatccaccttgaaaaACAGTTCTACAGCTGCTGAATTTATTAGACGAATCCAAGAACGTCCCAACACCCAAGTTCCATCTCAAGCAACTGCATTGGGGCAGAAACGCAAGTTACTAGAGCCCAGAAAACCTGGAGAAAATGCAGACACACCTGGGCCTGCCAAGAAACGGCCGCCGATTGAATCGCCGATTAAtagGAACACCCCGAACCATGAGAATTTCGGTACTTCATGCTCACAAGGAGCCGACACCCAAGAGAGTTTCCCTTGCGAAGTTTGCGAGAAAGTGTTTCCCACTCAGAAAATGTTACTCAATCATGTAGACTGTAACCCGAGAGGAGTTGATACGGGTGGAAATGCGTTTGAGTATGCTTGCAATATCTGTGATCGAACATTTGAGCGAGCAAAGAGCCTGAAAATGCACAGCatcaaatatcataaaattcgATTAACAGATGCATCCCCTCATAGACAGATTCAAAAACCTGTAGTTACTGAATGGTTACCCAAGATAAAAACTGAACACATGACTGAGGCTCCTGTTGAATGCAACACATGCTTTCAAATGTTTGACAACGAACATGATTTAGAGGATCACATCAATAATGACCATTCTGACATGCAGTCGGTAGCTATGGATGATGAAGCAGGGAGCGTTGCCAAACCTGAATGTGTTTACTGTTTtcaaacactaaaaaataattgtggGTTGGTGAATCATTTAAGAACAGCTCATGGCAAACCTAGTTGTATCATTTGTTTGGAGATTTTTAGCACACAAGAGGAACTACTTGAACATAGAGGGAGAGTTCATAAAGGTACTGAGCCACAACCCTCAGTCAGTCCTCCACTGTCCTTGAAAACAAATGACGAGTCTGTTGTCATGGAAAGTCCTCAAGAATATCCATGTAAATTATGTGGTAAAACTTTTGAAAGAGAAACCTCCCTATTTAGACACAAAGCATACCACACAAAAATGGGCCACACATCATTTGAGTATGTTTTAGAAGAACCTGAGCCAACACCCCCACCTCCTACCACATTCACATGTGAAAAATGTGGCAAAACGTTTGATAAGCACATTTCATTTGTCCGCCATAAGGCATACCACTCTAAAATGGGGCCTAACTGGGTTCCGTCAGAAGTCATCGCAGCAAAGCAAGCAGCCATCCTGGCATCAGAGTCTGGCTCAGGAAATGAGGATGGGGAAGCACACCAGGCTCAGCATGAACCAGAATCTGATGAAGATTTTAGAGATTCGTCATCTTCAGGAGTATCAGTCACCCAGTCAGTCAAAACTTTCACTAAGCGACAACTACAAAAGAATACTGGATTTGCACCATACTGTTTgtattgcaagaaaatttatgCAGACTATAGAAAGTTGTGGGATCATGTCCGTAAAATACATCCATCTAAAGAGCGCTATAAATGCCCACGTGATAGTCGAGTGTTTTTTAGTAAAACTGGTTACAGAAATCATTTGACAGCTCACAAGAACAAGGAAGGTCCGAGTGGTAATGCTGGCAACAAAGCTGAAAGTACTTCTTCAGCTTCCAGTACCCCAACTACTGGTACACCTGTTCCACCTGGCAAAGGAGGTTCTACAACATGTGAAATATGCCGCAAACAGTTCTCAAGCAAGGCCAGCTTACACCGTCATAACATGGAGATACACACTTTAAATGCTCCTACCTACAAATGCAATCTATGCCCTAGAGTCTTTATAAGGAAGGAATTGTTGGCTCAGCATAAAGAACTACATGTTCGTTTGGGTAAAAGTTATGTGGCAAAAGAAGAACCTTCTACTGCAAAGCCGCCAACAAAAAGTCGAGTTTTGGTGTACCCTAGAGCGTTATGCAGGTACTGTCCTAAAGtgttgagtaaaaaatatctgCCGGATCATGAGAAAATACATCGCAGAGCTGGTCACAAACCACTGGTACGGAATACAGCAATGAAAAACGTTGTCAGCAATGAGAACCCAAACACTTCCGTTTCTGTTCAGACTGTTGCTTCACCAAAGCAACAACCACTTGAGTCATTTAAGAAGAAAAAACCACTGTGCAAGTACTGTTCAGCAACCCCTGCAACATTTGAAGATTTGAGACATCATCTCGATCAGAGGCATGCTGGCAAAGAGTATTTCCCTTGTGTTAGTTGTCCAGAAGTATATTATGATGCTGTGGCCCTCAAAAGTCACTCTAATTGTCATTTCCGTAGCTACACAGCATGCAAGCACTGCAAACGTCCTTTTgcttacaaacaaaaattgatcAATCACGAAAAGTTTTGTATGCATCGCAAAGCACCACCACCAGCCCCTGTCAAACCTACCACTCCTGCAACTTCTGCTCCAATGTTGCAGCCCAAAACTGAGAGTAGTAGTACCCCTATATATACTTGTGACTTCTGTGGCTCCCAGTTCCTTGAGACACAGTCCTTCGTCAAACATTTGCAAGGCCATGCAAACAGATAA
- Protein Sequence
- MMDRYAKACRICLKEDGISVPIFGEEGRYRMVAEKIRDCLNIPAYHNDPLPKKICNRCFYKLDVASELKVLSQRSSAIFVQILSTLKNSSTAAEFIRRIQERPNTQVPSQATALGQKRKLLEPRKPGENADTPGPAKKRPPIESPINRNTPNHENFGTSCSQGADTQESFPCEVCEKVFPTQKMLLNHVDCNPRGVDTGGNAFEYACNICDRTFERAKSLKMHSIKYHKIRLTDASPHRQIQKPVVTEWLPKIKTEHMTEAPVECNTCFQMFDNEHDLEDHINNDHSDMQSVAMDDEAGSVAKPECVYCFQTLKNNCGLVNHLRTAHGKPSCIICLEIFSTQEELLEHRGRVHKGTEPQPSVSPPLSLKTNDESVVMESPQEYPCKLCGKTFERETSLFRHKAYHTKMGHTSFEYVLEEPEPTPPPPTTFTCEKCGKTFDKHISFVRHKAYHSKMGPNWVPSEVIAAKQAAILASESGSGNEDGEAHQAQHEPESDEDFRDSSSSGVSVTQSVKTFTKRQLQKNTGFAPYCLYCKKIYADYRKLWDHVRKIHPSKERYKCPRDSRVFFSKTGYRNHLTAHKNKEGPSGNAGNKAESTSSASSTPTTGTPVPPGKGGSTTCEICRKQFSSKASLHRHNMEIHTLNAPTYKCNLCPRVFIRKELLAQHKELHVRLGKSYVAKEEPSTAKPPTKSRVLVYPRALCRYCPKVLSKKYLPDHEKIHRRAGHKPLVRNTAMKNVVSNENPNTSVSVQTVASPKQQPLESFKKKKPLCKYCSATPATFEDLRHHLDQRHAGKEYFPCVSCPEVYYDAVALKSHSNCHFRSYTACKHCKRPFAYKQKLINHEKFCMHRKAPPPAPVKPTTPATSAPMLQPKTESSSTPIYTCDFCGSQFLETQSFVKHLQGHANR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -