Basic Information

Insect: Ephemera danica
Gene Symbol: GFI1B
Assembly: GCA_000507165.2
Location: KZ497626.1:176712-214274[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00035 0.024 15.1 0.9 1 23 426 449 426 449 0.95

2 6 0.00057 0.038 14.4 0.6 1 23 455 477 455 477 0.96

3 6 1.3e-07 9e-06 25.9 1.7 1 23 483 505 483 505 0.98

4 6 8.8e-05 0.0059 17.0 4.4 1 23 511 533 511 533 0.97

5 6 1.3e-07 8.8e-06 25.9 2.5 1 23 539 561 539 561 0.98

6 6 1e-05 0.00069 19.9 0.5 1 23 567 590 567 590 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00035	0.024	15.1	0.9	1	23	426	449	426	449	0.95
2	6	0.00057	0.038	14.4	0.6	1	23	455	477	455	477	0.96
3	6	1.3e-07	9e-06	25.9	1.7	1	23	483	505	483	505	0.98
4	6	8.8e-05	0.0059	17.0	4.4	1	23	511	533	511	533	0.97
5	6	1.3e-07	8.8e-06	25.9	2.5	1	23	539	561	539	561	0.98
6	6	1e-05	0.00069	19.9	0.5	1	23	567	590	567	590	0.96

Sequence Information

Coding Sequence: ATGGAGACAGCCATATCATCAACTCCTATTGACTTTACGTTAAAATCAGCAGCTGCAGCAGCCGCAAATAACAACAATCATCAACCTTACAGTTATCGTGCACCTTCACCGGCGCCTATGACAGGAAGTAGATCTCCTAGTCCTgtaaatcatcatcatcatcatcattccAATGGACTTCATGGACTGTTTTTAGGCAAGAATTCGTTACATCCTAATTCAAGTGCCTTCAGAGTTGTAACGCCTAAAGGGAAGAATGAGGGTCCAACACTGTTCTCCCCAGCATCAGGAGCACCAGCAGCCGTGACTGCTGCTGCCGCGGCCGCTACGTCATTGGCCGGCCTTAGTTATTACAGTCGCTTGTGGAGTGCAGCTCCACTGGTGAAGGCAGGCAGCCATGACAAATCTACAGGGCCTCGTGAACCTGCAGCCCTGCCTCTGACTGCACGTTTCCCTGCGCCCAGTACGCCTAGCCCACCACCCTCGGCCGAAGCTCAGTCTAAAGCAGACATCACGTTCGCCGTGAGTCGCTTGGTATCCGCGGAACGTCGCAGTCCGAGCGCTGAGCCAGCCACGAGCTGCAGTGAGCGCCAGAGTCCTGAACGAGCTTGCAGCACGAGCGCGGCAGCCGCAGACGAAGAGGAGGAAGAAGCTCGTACTCGAGTGTGGGCTGGAGGTCGAGACTCTCCTGAGGAACGTCCTGACGCTGTGGTACCCGTGAAACGCTCAGAAACATTCAGCGTCTCTGCACTCCTGAGTCGCCCTGACCCAGCGCGTCGTGTCCTCCCCGATATTCCTCGTTCGTTCCTCTACCCTAGACTCGACCTGAAAGACATGCCTCCCCACGCCCACTTCCTCCCTCGCCACTTCCCATTCCTTGGTCTCGGACTGTACCCTCACCACCCACCCCCTCCTCCACCTGCACCTCACAAGGACATGGATTCCTCACCTACCCCAACACATTTCGGATCTCTCTACTTCAGTCTGGCAGCGGCGGCCGCTCATGCAGCTTCCCAGCCGACATCTACATCTCTTGCCTCTCCCACATCTACATCTCCAGTATCCTCAGCTTCAAGTTCACCTCCAGGAGGCGCACCTTATCATGAAGAACTGTTTCGACTGCGTCATCACTTTCATCATGCCATGCAACATGCCGCTGTGGCAGCAGCAGCCGCAGCAATGGCCAATGGTAATCCTAACATGTCATCAGGGCAAAACGCATCAGAATGTGGGCCGGGAGGACTTTTGAGACCTGTAGGTCCTTTGGGAGACGTATACTCTTGTATAAAATGCGAGAAAATGTTCTCGACGCCTCATGGTCTGGAAGTTCACGCGAGAAGATCGCACAATGGTAAACGACCGTTTGCTTGTGAATTGTGCAACAAGACTTTTGGCCATGAGATCAGCCTTAGTCAACACAGGGCGGTGCACAGCGTTGAGAAGGTGTTCGAGTGCAAGCAGTGCGGCAAGACGTTCAAACGTTCCTCCACGCTCTCCACGCATCTGCTCATCCACTCGGACACGCGGCCATACCCGTGTCAGTTCTGCGGCAAACGTTTCCACCAGAAATCCGATATGAAGAAGCACACCTACATACATACAGGTGAAAAACCACATAAATGCAGCGTTTGCGGCAAGGCGTTCAGTCAGAGCTCCAACTTGATCACACACAGTCGAAAACACACAGGCTTCAAACCATTCGCTTGTGATCTATGTGGTCGCGCGTTCCAGCGTAAAGTGGACCTGCGACGTCACAAGGAGACACAGCACACCGAGATTCGTACGGTTACCTAG
Protein Sequence: METAISSTPIDFTLKSAAAAAANNNNHQPYSYRAPSPAPMTGSRSPSPVNHHHHHHSNGLHGLFLGKNSLHPNSSAFRVVTPKGKNEGPTLFSPASGAPAAVTAAAAAATSLAGLSYYSRLWSAAPLVKAGSHDKSTGPREPAALPLTARFPAPSTPSPPPSAEAQSKADITFAVSRLVSAERRSPSAEPATSCSERQSPERACSTSAAAADEEEEEARTRVWAGGRDSPEERPDAVVPVKRSETFSVSALLSRPDPARRVLPDIPRSFLYPRLDLKDMPPHAHFLPRHFPFLGLGLYPHHPPPPPPAPHKDMDSSPTPTHFGSLYFSLAAAAAHAASQPTSTSLASPTSTSPVSSASSSPPGGAPYHEELFRLRHHFHHAMQHAAVAAAAAAMANGNPNMSSGQNASECGPGGLLRPVGPLGDVYSCIKCEKMFSTPHGLEVHARRSHNGKRPFACELCNKTFGHEISLSQHRAVHSVEKVFECKQCGKTFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCSVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEIRTVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -