Edan000078.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ501771.1:209879-217344[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.084 5.7 7.6 0.1 2 21 322 341 321 342 0.94 2 15 0.09 6.1 7.5 0.7 1 23 352 374 352 374 0.96 3 15 0.026 1.7 9.2 0.2 2 23 382 404 381 404 0.95 4 15 0.077 5.2 7.7 5.0 1 23 456 479 456 479 0.94 5 15 7.9e-07 5.3e-05 23.4 0.6 1 23 682 706 682 706 0.92 6 15 0.0046 0.31 11.6 0.6 2 23 758 779 758 779 0.96 7 15 0.27 18 6.0 3.9 2 23 821 843 820 843 0.95 8 15 3.8e-05 0.0026 18.1 0.2 2 23 851 872 850 872 0.96 9 15 0.00056 0.038 14.5 3.0 1 23 903 926 903 926 0.94 10 15 0.011 0.74 10.4 1.6 1 23 946 969 946 969 0.98 11 15 0.052 3.5 8.3 1.1 1 23 1003 1026 1003 1026 0.97 12 15 0.00049 0.033 14.6 0.2 2 23 1057 1079 1056 1079 0.95 13 15 0.12 7.9 7.2 4.2 3 23 1127 1148 1125 1148 0.95 14 15 0.0016 0.11 13.1 2.8 1 23 1159 1182 1159 1182 0.97 15 15 0.00014 0.0095 16.3 0.9 1 23 1194 1216 1194 1216 0.97
Sequence Information
- Coding Sequence
- ATGGAGAACACAGGATCCAAATGTGATGTTTGCTTGGGAGGGGATGGACAAGCATCTGCTTCACCCCAACTTCTTCCCCTGTTAACTAAACATCTTGGCAACTTTATGCGGATGAAGCCGGTTAGAGCATGTGAAGCTTGTGGACAACTTCTGACACTCTGGGATGATTTCTCTCGACAAGCAAGACTTAACCTCGCCGTTTCTCATCCTGAAGCAGTGAAAAATAGTGAGCAGTGTGAAAAAGACAAGCAACTGTTGCAAGCAGAAAACTCAACCCAGGAACTGAGCTTCCCTTGTGATTCAACATTTATGTCTCCAACGGCAAATGAAGGTGATATTCCTGATTTTCAATGTCCAACTGTCGTTAGAACAGAAATATGTACAAACCAGGAAGAAGGATCTATTCTGAAATCAATACTGCAGTCACCTGAAAAAAACACAGGATTGGAAGAAAACAAAGTGGCATATCTTAGGCAAATCAAGTTAGCAGCACCAATTGACCATCAACATTTTGCCATGAGCAAAGAATGTTGTGAGGAAAGTAAACCTTCTGAAGTTTGTAATGAGGATGTATCCAACAGTGAAACACATGAAATGGTTGCTTTCACTGAGGAGAACAGCTTCACATCAGACTTCATGTGTAAACAAACTCAGACTTCAACAACCATGAAAAGTATGGAGAAACTAAAAACAGTGCAGCCACCTGCAATCCCTATGCCACAACATACCAGTATTCCTATGCCTTTAGTAGATACAAAGTGCACATCAATGGGTGCAGTTGCATCTGTTTCGGATAGAGAGGAAAATCGTGGGAACACATTTATAACATTAGGAAATTTTGCATCTGCCGACACCATTATAGAGAACAAAGCTGCACTTCAACAAAACCAGATAATCTCCACTATCACCAAGAGGAGTTATGcaaacacaacaaaaattgaatatttgacTCTTGGATGTCTACCTTGCCCCACCTGCAGTGCAACTCTTCCTACTCAGAAAGCTTTACACGAGCATATGATGAATTCTTGCCTACAAAATCGTCattcacaatttatttgtgCTTTCTGTGCCAAGCAATATAACAGTAAAACAGGGTTAAGTTATCACTTGATGCAGCACTTCACTGAATTGTCTTCAATCCCTTGCCCTGTCTGTAAATTGGTGATGTCAAGTGCGCGAACCTTGAGGAGTCACCAATTGAGATTCCACACTCACGAGTTGCCAGCTCCAGCCTTGACTCCTTGTGTATTTTGCAAGGTGATGTTTTGCAAAAGTGTTCTGATGAAGCACTACAACAACTGTCGACAAAACAATCTAGTTGTTTGCTTGAAGAAATGCAACATTGCTGAGCAACTTTCTGTGTTTACGTGCTTCTGCTGCTATAAGATATTTATGAACAAATCGGATCTACTTCATCATATGGAGAGTGTCCATAAAATGACTTATCATTCAAGTTCAGACACAAAATTCACGTGCACATTATGCAGTCATAAGCTCGATGAAGAACAAGATTCACTTCAAGCCCCAGAAAATATTTCTGTGCAGGAAGGCAGTGTCAATAGTCAGATAATCTCAGCTAGTGATGGAATTTCTGACAGTCAAGTATCATCTCCTAGTGAAGACATGCTTGTAAATGCACAGAAAATTTCGGCTAGTGAAGAAATAGATGACAGACAGATGCTATCTTCTGTTGAAGACACTGCTGTAAATGATCAGGGTCTCCCTTCCGCTAAGGAAAAAGGTGACAGTTGGATGCTATCTCCTGATGAAAACGTCATTGACCATCAGATAGCCTCTTCTAATATCAGTGAGGATGCAGAAAGCAGTGAAACACATCAACAAAGTGTCCAATGCCAGTTTTGTTACAGAAAATTTACTGTTATTCATGCTGTATCTCATCCAGGAAAAGTTTTGACAAGCAATCCTACATCTGATTCAAACACTTCTAATGAATTTACTTTagcaaataatgaaataattcagAAGGCACCTTCTTTGCGGAAGCGACAATATGTAAAAAGTGTgccaaaaaagaaattatttaaatgcaaagaCTGTGGAAAAATATTCCCGTATGCTTCTTGGCTACAGCGCCATCAGACTACTGCTAAACATGTTAAAGAAGTGTCTCTTGCAGAAGTTGGACCTGTTGAGCCAAATTCTGCTTCTAAACCAGACAACAAAATTGCTGACAGAGTAGAGGTACAACAAGAACAATCCACTCCATCAGCAGGAACCGATCCTCAGGGTAATGAAACTTCACTTGCTACATGTAAGTTGTGCAACAGAGGATTTGACAAAGTTTCCGGATTATTGAGACATTTGTCTTACCATGGGGAGAAGGAAGCAAGAGCTCTGAAAAATAGTCTGCTTCTGGAAAGAGAATTGTCAGAAAGATCAAACGAAGTGAAACAAATGATAGATGAAGTGTCAGTGAAACCCAAAACAACTGAATTGACATGCCATATGTGTTTCAAGACAATGGAAACTGTGAAGCAACTTAAAAATCACATTCACTCGGCCCATCTGGCTAAGAATTCCAGATTGAAATGTCCACTGTGTCCGTTCCGTTTCATTACTCCTAAATCTTTGAGCAGGCATATGGTAGTTCATTCAAGCAACAACGAGAGCATCATAAACTTAGCTACACAAATGGATACTGCAAGTGGTAATAGAATGCAGCACTCGTATACAAAGTCTAAATATACgtgcaaaatttgttttaaaggtTTCAATGATTCATATGGATTCCAGCGTCACAAAAGCTACAACCATAACTTTAATAGGCAACACTCTTCAAGACCAATCAAGGCTACTTCTGtcataaaaacattcaaatgcACACTTTGTCGAAATAAGTATCCTACTGTACGTGGTCTCAATCAACACATCCGTCGATTTCACAACAACACCGaacttttggaaaaaaaagaggaagaaaaggttgacaaaattaaagaatttattgCTTCCAACAGTAAGGCTGCTTCTGTTGCAGACTCCTTCAACTGCACATTATGTCAAAATCAATATCCTACTGTACGGGGCTTGAATCAGCACCTGCGTCGATTCCACAACAGCACCGAACTTTTGGAACAACCAGAGGAAGAAAAAGTTGTTGAAAAGGGTAAAAAAAGTATTGCTCCCACCGTTGTTAATAACCTGCCATGTGATTATTGTCATTTGGTGTTTCCATCGGAGAGTGCTTTGGAGACACATTTCCAGATGGATCATTTGCAATCTGGAATTGAAAATGTAGTTAGTGGACCAATAGCAATGATGGAATCACCATCAAGTAAAAGCAAGATTGAAACATCAATGGAGTTAAATGCAAAACCAGAACAGACAAGTGCAGTGCAAACCAAAAAGTTTGGCTGCAACATTTGTAATAGATTCTTCTTCAGTAAAGGACGCCTTCATATACACTTATGCAATGCCCATCAGAAAAGAACTAAGGATATTTCAACTGCCTaccaatgtaaatattgtaagaaGCAATTGTCAGATGCTTGCCGATTGAAAACACACATGGCAGTCATGCATGCAAGCAACCCTCACAGTTTCCCAAAATCCAATTTCAACTGTAACATTTGTGGCAGAGGAGTGAACACAAAAGTGGGACTCTTTAGACACATGCTTCATCACAGAAAGTGGGTCTAA
- Protein Sequence
- MENTGSKCDVCLGGDGQASASPQLLPLLTKHLGNFMRMKPVRACEACGQLLTLWDDFSRQARLNLAVSHPEAVKNSEQCEKDKQLLQAENSTQELSFPCDSTFMSPTANEGDIPDFQCPTVVRTEICTNQEEGSILKSILQSPEKNTGLEENKVAYLRQIKLAAPIDHQHFAMSKECCEESKPSEVCNEDVSNSETHEMVAFTEENSFTSDFMCKQTQTSTTMKSMEKLKTVQPPAIPMPQHTSIPMPLVDTKCTSMGAVASVSDREENRGNTFITLGNFASADTIIENKAALQQNQIISTITKRSYANTTKIEYLTLGCLPCPTCSATLPTQKALHEHMMNSCLQNRHSQFICAFCAKQYNSKTGLSYHLMQHFTELSSIPCPVCKLVMSSARTLRSHQLRFHTHELPAPALTPCVFCKVMFCKSVLMKHYNNCRQNNLVVCLKKCNIAEQLSVFTCFCCYKIFMNKSDLLHHMESVHKMTYHSSSDTKFTCTLCSHKLDEEQDSLQAPENISVQEGSVNSQIISASDGISDSQVSSPSEDMLVNAQKISASEEIDDRQMLSSVEDTAVNDQGLPSAKEKGDSWMLSPDENVIDHQIASSNISEDAESSETHQQSVQCQFCYRKFTVIHAVSHPGKVLTSNPTSDSNTSNEFTLANNEIIQKAPSLRKRQYVKSVPKKKLFKCKDCGKIFPYASWLQRHQTTAKHVKEVSLAEVGPVEPNSASKPDNKIADRVEVQQEQSTPSAGTDPQGNETSLATCKLCNRGFDKVSGLLRHLSYHGEKEARALKNSLLLERELSERSNEVKQMIDEVSVKPKTTELTCHMCFKTMETVKQLKNHIHSAHLAKNSRLKCPLCPFRFITPKSLSRHMVVHSSNNESIINLATQMDTASGNRMQHSYTKSKYTCKICFKGFNDSYGFQRHKSYNHNFNRQHSSRPIKATSVIKTFKCTLCRNKYPTVRGLNQHIRRFHNNTELLEKKEEEKVDKIKEFIASNSKAASVADSFNCTLCQNQYPTVRGLNQHLRRFHNSTELLEQPEEEKVVEKGKKSIAPTVVNNLPCDYCHLVFPSESALETHFQMDHLQSGIENVVSGPIAMMESPSSKSKIETSMELNAKPEQTSAVQTKKFGCNICNRFFFSKGRLHIHLCNAHQKRTKDISTAYQCKYCKKQLSDACRLKTHMAVMHASNPHSFPKSNFNCNICGRGVNTKVGLFRHMLHHRKWV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -