Edan012183.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ498097.1:104414-110161[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.34 23 5.7 3.3 2 23 221 243 220 243 0.88 2 10 0.0026 0.18 12.4 9.5 5 23 252 270 243 270 0.85 3 10 0.00037 0.025 15.0 5.1 1 23 276 298 276 298 0.98 4 10 2.8e-05 0.0019 18.6 0.6 1 23 306 329 306 329 0.97 5 10 0.0057 0.38 11.3 6.2 2 23 337 359 336 359 0.97 6 10 3.1e-05 0.0021 18.4 0.6 1 23 365 387 365 387 0.98 7 10 6.7e-06 0.00045 20.5 0.7 2 23 394 415 393 415 0.97 8 10 5e-05 0.0033 17.8 1.0 1 23 420 442 420 442 0.97 9 10 0.00021 0.014 15.8 7.0 1 23 448 470 448 470 0.96 10 10 2.1e-06 0.00014 22.1 1.9 1 23 476 499 476 499 0.98
Sequence Information
- Coding Sequence
- ATGGGGGGTCCATCTCTCTTGGACTTTGAGGAACGATGCAGGATTTGTACGCTGAAACATGcgtcaataaatttatttagtgaCGTCGCAGAGAAAAAGTTATTGAATGACAGCATTAAGAAGTATTTAAACATTGAGGTGTCTACTGAAGATGGTCTTCCCAAGTCCGTGTGCAAGAAATGCTGCGACATTCTCTGCAAGTTCCATCGCTTTGCTGTTGGTGCTGTAAACTCCCAAGACAAACTGCAGGAGCTCGCTGCTGTGAAAGCTGTTGGAGAAGAAGAGGAAGAAGAAGTGAAGTCAGATGCCTATCAAGAGAGTGTGAAGTCATATTCTGCCGACACACCCACACAGTTTCTCTCCATGCTGTCTGGGAGCCCTGGAGAGGCAGTCGAGGTCTCTGTGGACCCCTTCAGCCTGGTGGAGGCAAACGGGGATGGCGTGACGACCCGCGAGCGCCGGCGCAGACAGGAGGCCGAGAGTGAGGATGAGATCAAGTTGGAGGAGGAGCTGCTGTACGAAGAAGAAGATGATGATGAAAGCTCAACCagtgaggaggaggaggaagatgAGGAGGATGGCAAGCCAGCGCCACGCCGCACCAGAGCGAGGTCAGAGCGCGAGGAGCAGGAGCGAGACCTCTCCGAGTTCTTCCAGCTGATCTGCTCCGAGTGTGGTTTCAAGTGCACCAACTTCGTCAGCCTCTCGGCCCACTGCAAGTCGGTGCACAACTGCCGGCCCACGGTGCGCTGTCACTGCGGCAAGTCCTTCAACAGGAGAAGCCATCTCATCCGGCACCGACACCAGCATCTGGGAGTGCACAGGTTCAAGTGTGAGACTTGTGGCCGAGGGTTTCACTTCAAGTTCATGCTGCGCTCGCACATGTTCACCCATGGACCCGAGAGTGAGAAGCCATACCGCTGCGACCAGTGTCCCAGGGGCTACATCACCAAGTCTGGACTCACCAACCATCGCTTGATGAAGCACTTGCCACCCAGAGCTCGGGTCACCTGTGACATTTGTCAGCACACGTTCAGCCATCCCAACTGCCTGTACACCCACAAGAAGACGGTGCATGGAGAACAGCGCCACTTTGTGTGCCATGTGTGTGGCAAGACCATGTCCACCCTGGGGAACCTCAAAGGTCACCTGGAAACCCACCGAGAGTCCTGCAACGTGCAGTGCGAAGTCTGCGGCAAGAGGTTCAAGACTCGCATGCGTTTGGTGCGGCATATGGAGTACCACCGCTCGACCTGGCATGAGTGCAGCACTTGTGGGCGCACCTACCAGACGAGAGGTGCCCTGCGCTCCCACCTGCTGGTACACAGTGACCAGAGACCTCACAAGTGCTCGCTTTGCCACAAGGCCTTCAAACGAAGCAAGCAACTCAAGCTGCACTTGTACCAGCACACTGGGGAACGGCCTTACAAGTGTCCACACTGCCCCAAGACATTCACCAACGCTGGCAACCGAGCCACACACAAGCGCCGCATTCACTTGAAGCagattgcagcagcagcagcagcacagacTCAGAACTTGGTCAGCATGCAGCAGCAACCTCAGAATCTGATGCCTCACCAGGAAATGTTGCATCACACCATGCTGAGTAAcatgcagcagcaacagcagcagcagcagagtaTGCTGGGAATGATGAGTGGTATGGTCATCCCCCAGGGTCTGCCCCCACCACACCCCCTGCCTCCACCCCCTCACAACATCCCACATATCTTGCCCCCACCTCACATGAACTCCCATCATGTGTATCAAAACATCTGCCAGCAGCAACCCATCTCATAA
- Protein Sequence
- MGGPSLLDFEERCRICTLKHASINLFSDVAEKKLLNDSIKKYLNIEVSTEDGLPKSVCKKCCDILCKFHRFAVGAVNSQDKLQELAAVKAVGEEEEEEVKSDAYQESVKSYSADTPTQFLSMLSGSPGEAVEVSVDPFSLVEANGDGVTTRERRRRQEAESEDEIKLEEELLYEEEDDDESSTSEEEEEDEEDGKPAPRRTRARSEREEQERDLSEFFQLICSECGFKCTNFVSLSAHCKSVHNCRPTVRCHCGKSFNRRSHLIRHRHQHLGVHRFKCETCGRGFHFKFMLRSHMFTHGPESEKPYRCDQCPRGYITKSGLTNHRLMKHLPPRARVTCDICQHTFSHPNCLYTHKKTVHGEQRHFVCHVCGKTMSTLGNLKGHLETHRESCNVQCEVCGKRFKTRMRLVRHMEYHRSTWHECSTCGRTYQTRGALRSHLLVHSDQRPHKCSLCHKAFKRSKQLKLHLYQHTGERPYKCPHCPKTFTNAGNRATHKRRIHLKQIAAAAAAQTQNLVSMQQQPQNLMPHQEMLHHTMLSNMQQQQQQQQSMLGMMSGMVIPQGLPPPHPLPPPPHNIPHILPPPHMNSHHVYQNICQQQPIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -