Edan016737.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ497721.1:411924-420509[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.4e-05 0.00094 19.5 0.0 2 23 469 492 468 492 0.94 2 10 0.0028 0.19 12.3 2.7 1 23 498 522 498 522 0.98 3 10 0.00054 0.037 14.5 1.1 3 23 530 552 528 552 0.91 4 10 0.032 2.1 9.0 0.3 3 23 560 582 559 582 0.89 5 10 2.9e-07 1.9e-05 24.8 0.4 1 23 589 611 589 611 0.99 6 10 0.001 0.069 13.6 0.5 2 23 619 642 618 642 0.95 7 10 6.2e-06 0.00042 20.6 1.3 1 23 648 672 648 672 0.98 8 10 0.00025 0.017 15.6 0.7 1 23 678 702 678 702 0.98 9 10 4.5e-05 0.003 17.9 0.4 1 23 708 732 708 732 0.98 10 10 3.1 2.1e+02 2.7 2.4 1 23 742 767 742 767 0.92
Sequence Information
- Coding Sequence
- ATGTCCTGGAAAGAAGTGTTAAAACCGTCGTTATCGGAGTTTGGGCCGGTCGACAACCAACCACCCAGTAGACTTTCGGGTTGTTCAGATGGACAAGAAAGTATGGTTCAAACCACCGTAGATTCTCTTTATGAACCAGGGGATAAACTATGTTGTGGACTTGAGCTTCCCTGTTTACCTGGACCATCAGGTTCAGGTTCTACGTATGAATTGGTGTGCGTAGATGAGTGGCTCAAAACTAGAACGGAGTCCCTTTCCAGTATGGACATGGAAGTGGCCATGAAAAATGAAGGAATAGACCCTAATTATTTGAGTGATTCTGGTGTCAGCAAGGAGAATCCCAATTTATCTGAACTTGATCAATTTTTAACTCCCAAGGGTGCAGTTGATCTCTGTATTGTGAATGATGTTTGTGGTGTTGGTAGCTCTAGAAAAAGACTTAGTGATTTGGGAGAATCAGAGGATTCTGGACTTTTACTCTCTGATGATTTACTTTTAAAAGAAGGTCCTGCGGGAAAGAAAGCATTGTTTATGATAGAATCAATCGATGAAACTGTCTCGAAAGATTTAAAAGATGATGATGGTCTTTGTCGTCGCGGCAGCTGGGCAGACAGTTTGGAACTTGGCAAGGATAAAGTCAATTGGGAAAGCATGTCTAATACAAGTCACAGAAGCCATGAACTGGAAAAAGATGTTGATTTTCCGGAATTCAACTTTGTTCCTTCATTTGATCCATTGTGTTCAATAGAATGTTCATTGCCAGTTGGCAAAGAACTTGAAAGTTTGGATAAAGATGAGGAAAATGATTTATCTGTGATACCAATAGCCAGTAAAGCAAGCGTAGAGGATGATTCCATGCTTGAGAAAGGAGATCCTGTTTTACCATCAATACATGATTCTCTGGATGCAATTGAGGAGGTTCCAGTGCACCCTAAAACTCCTCCTCCATCTATATCTCTACTGAAGAATCCACTGCCCGGTAAACTGAATGTGATTGAAGAAGGAGATGACGATGAAGATGACTCCAGTGTGGCTGTCATTGCGATATCCACCAATAAAATGGAGAACACAACACAGATTGTCATCAGAACATCGCAAGGTGACCAGCAAGTGTTCCAGGGCAAAACCTCGGAGTTGGTGCAAGCCACATCAAACCTGGGTAACCAGCAGAAGTTGGCGGTCCCTCAGTCGACAACACAAACGGTGGAGAATGGGAACGAATCAGAGAGTGATTCAGATGGCAACAGTGAAGATCAACTAGCCATGGACTTCGGCAGTAAACAAGACAGTTCAGGGGAGGGTAATGATGAAGATGAACAGCCTCTGATTGATGCATTAGCCGACATTGGCATCAAGGTGGATTCCTTAGTCTGCATTGCCACCATGAGTGGACAGAAAATGTGGGTGTGTCCAGAGAAAGAATGTGGCAAGACGTATCCCCGACAGAGCATGCTCAAGGTCCATATCCTGGGTCACTATGGTCTCAGGCCCTATAAGTGCGACTTTGAGGGTTGCTACTGGTCTTTTTACACCTATTTCAAACTGAAGAGGCACAAAGCAACTCATTTAAAGAAGAAAGATTTTctgTGCACATTTGAAGGCTGTGGCAGAAGATTCACTACTATATACAACCTAAACACTCACAGCAAACTGCATGAGCGACCAGCTGAGATGGTCTGTCGAGTACCAGGCTGCAATGCAAGTTTTCAAACCAAGAGACGTCTCGAGAATCACTTGAAAGAACATGATGTGGTCCACGCCCCCTACAGATGTCCCTATTGTGGGAAGGCATACTACTCCAGCAACTCCCTGAATGCTCATGTACGCAGCCATGAGCACAAAGAAGAGGAAGTGAGATGTCAGTGGGCAGGTTGTGGCAAATTGTTCGATAAACCTTGTCGCCTGAGGGCTCACATGAGGGTGCACACTGGAGATAGACCATACTCCTGCAATTTTGAGGGTTGTACTTGGTCTTTCTCAAGTGCAAGTAAACTGAGGAGGCACCAACAAAAACACACGGACGAGAGGAAATTCAAATGCAATGTCGCTGGATGTCCAAAAGCTTTCCTGCGCTCAGAGCATTTGAGAGAACATCTGAGTACTCATGCTGGTAGTCGCAACTTTCAGTGTACAGTTGAAGGTTGTGGAGTCAAATTCACAGCAAAGAGCAGTCTGTACGTGCACATGAAGAAGCACCAAATGCCCCAGCAGGAGAAGGTGTTGTATGCGTGTCCAGTGGAGCAGTGTGACCGCAAATATTTGTGTCGCTCGAGCCTACGCCATCACCTGCTGAAGGCTCATCCCGTCACTATAGGTTCTGATGGGAATGCAGAGAGTCTCGTGACCTTTGTTACAAGTGAGGATGACCAAGACATCTTGCTAGATGGCAGTGCATTGGTCTCAGCTGATGGAGGAGTGGTTCTGGAACCTGAACAAAATGTCGTACTGTCAACCATCAACCCTGCTGACATCATGTTGACAGGACTCTCCGCTACTTCGTCAACATCATGTCCTCCCATCTTGCTTGCCAACGGAATTTTATCTGTGCATGGtGACGAGGAAGAAGAGAGTGGCACTGGGTGTGCACGCACCAATCTCCCTCTGCCCTTGGTACCACGACGTCGCAGCATGCTTCCCCCCGCCACCTTACTGTCGGATGATTTGTTCTCCGACCCTCTGCTGGCCACTGCACATTCCTCGGGCATCGAGTTCCAAATCATGCTGGACAGCAGACAGAGCAGAGACTTCCCCGAGTCCACCATCAACCTGAGGGATCTGGAGTGA
- Protein Sequence
- MSWKEVLKPSLSEFGPVDNQPPSRLSGCSDGQESMVQTTVDSLYEPGDKLCCGLELPCLPGPSGSGSTYELVCVDEWLKTRTESLSSMDMEVAMKNEGIDPNYLSDSGVSKENPNLSELDQFLTPKGAVDLCIVNDVCGVGSSRKRLSDLGESEDSGLLLSDDLLLKEGPAGKKALFMIESIDETVSKDLKDDDGLCRRGSWADSLELGKDKVNWESMSNTSHRSHELEKDVDFPEFNFVPSFDPLCSIECSLPVGKELESLDKDEENDLSVIPIASKASVEDDSMLEKGDPVLPSIHDSLDAIEEVPVHPKTPPPSISLLKNPLPGKLNVIEEGDDDEDDSSVAVIAISTNKMENTTQIVIRTSQGDQQVFQGKTSELVQATSNLGNQQKLAVPQSTTQTVENGNESESDSDGNSEDQLAMDFGSKQDSSGEGNDEDEQPLIDALADIGIKVDSLVCIATMSGQKMWVCPEKECGKTYPRQSMLKVHILGHYGLRPYKCDFEGCYWSFYTYFKLKRHKATHLKKKDFLCTFEGCGRRFTTIYNLNTHSKLHERPAEMVCRVPGCNASFQTKRRLENHLKEHDVVHAPYRCPYCGKAYYSSNSLNAHVRSHEHKEEEVRCQWAGCGKLFDKPCRLRAHMRVHTGDRPYSCNFEGCTWSFSSASKLRRHQQKHTDERKFKCNVAGCPKAFLRSEHLREHLSTHAGSRNFQCTVEGCGVKFTAKSSLYVHMKKHQMPQQEKVLYACPVEQCDRKYLCRSSLRHHLLKAHPVTIGSDGNAESLVTFVTSEDDQDILLDGSALVSADGGVVLEPEQNVVLSTINPADIMLTGLSATSSTSCPPILLANGILSVHGDEEEESGTGCARTNLPLPLVPRRRSMLPPATLLSDDLFSDPLLATAHSSGIEFQIMLDSRQSRDFPESTINLRDLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -