Edan011546.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- prdm10
- Assembly
- GCA_000507165.2
- Location
- KZ497706.1:631192-650218[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.003 0.21 12.2 0.1 2 23 736 757 735 757 0.95 2 13 0.0001 0.0068 16.8 1.5 1 23 804 826 804 826 0.97 3 13 0.0096 0.65 10.6 1.9 3 23 880 900 879 900 0.96 4 13 0.0016 0.11 13.0 0.8 2 23 925 946 924 946 0.97 5 13 5.7e-06 0.00038 20.7 0.8 1 23 964 986 964 986 0.99 6 13 1 68 4.2 1.7 2 23 995 1016 994 1016 0.94 7 13 0.003 0.2 12.2 1.4 1 23 1023 1045 1023 1045 0.97 8 13 0.00023 0.016 15.7 2.3 1 23 1051 1074 1051 1074 0.96 9 13 0.00028 0.019 15.4 1.9 1 23 1079 1101 1079 1101 0.98 10 13 8.2e-06 0.00055 20.2 2.1 1 23 1107 1130 1107 1130 0.94 11 13 0.0091 0.61 10.7 1.9 1 23 1165 1188 1165 1188 0.97 12 13 9.7e-05 0.0066 16.9 2.3 1 23 1210 1233 1210 1233 0.97 13 13 0.0007 0.047 14.2 1.8 3 23 1273 1294 1272 1294 0.98
Sequence Information
- Coding Sequence
- ATGGATAACTCCGGGTCGCAAGGACCCCCCGGAGAAGTTGATGGATGTAAATCTGATCAAGGCTCTCCATTACCGAGCCAAGAAGCTGCTGAATTGGATTGGACTACAGCTACCACATCCCATTTGGAACAGGTGGAATATGTTGAGGAAGCTCCAATCGAATATGGCCGTGCCAGCTTCACAAATTTTGAGCCAGCAACGCCGTTCTCTCCTCAACAATCAACATCAATGGACTACGAACATCGAGTCAGTCCTCTGGATCCCAACATGAGTTCAGCAGCTCGTTATTCCCCGGTCTATTCCATATCTACTTCACTGGCGGTGCATCATTCACCATCTCACAACCTAGCCATATCAAATCCCAGTTCTCCATTTCCTGGCACTGTTGGAATTCCTAACCCTAACAGTCCCATCAGTTCCACAAACAATCCTATAGACTATAGGCAAAGGTCACACCACCATCACCACCAAAACCCAACTCCAAGTACAAGTTATGCCACAGCAGTGTTGCGAAATCCTGACTCGCCCATTGCTGGTCCCAGTGGACTGCTGCGTCAAGCTTTCTTTCACTCGGATCGTCTCACACCATCTCCGTCTCCTCAGTCACCCTTACAGGCTCCAATGACACCATCCGACAACTTTGTGTCATCTTCTACTGGACCCTCGGATGATACAAACCCTATGATGGCAGACACTTCAGATCTCCGTTATTTGACACAAACCAGTGACAGCAACAGTATCTTGGATCCCAAAGTTGACTCGACTAGAGAAGTGGCAACACCTCTACATGATAGTCATGAGATGGATAGTTCGTCTCCTCCTGGTAGCTATGGCCATGAAGCCACGCCCGTGGATAGTCGAGATGATGACGAAGGCATTGGGAAGAGCCCTGACAGTCAACATGTAGAGGTACTCATTGGCTACGAGACCATTCGTATCGTGGAGCCAGAAGCCAGGTTCATTGCCAGCGCTGCAGAGTCCTACCTGGCTGCAGCTGCTGCCGAGGGAAACTCCATGGACCCTCTGGTTGTGGCCCTCAAAGGTCGTGGCTCCCTGGTGTTCAACCCCGAGGGCCTGACCCGAGCAGAATTGCTGGGACTGAAGAGCCGTGGCTTGCTGATGGAGCCAGGAGGCAGCACAGGGACTAGCAACGCATCTTTACCCTTGCTGCTTGACTCCAGTATTGCAGCAGGTCTGAAGGCTGAAGGTCTTGTCCTGGAAGACATGCCGGGTTTGGAGGATGCCACAGACGATGGTCTGGAAGGGGAGGATACAGTGCTGGAGACACTCAAAACTCGCAGTACTCTGGAGGAGCAGCAGCTGCTGGCAGCTCAATGCACTCCACATGCCCCCACCATGGACACAGACGGCAACCTCAGCAGTACCAGTCTCTCCTGCAGCCCCTCGGCCTTCTGTGACGATAGCTCACACATGGCAGACCTCAGTGAAGAAGGACTCTCCCATCTTGCTTCTCACGGAGTGGTGTTGTTATCTGGCAGAACACAGTTGGAAGTGAATGGCAAGCATCATACAGATTCAGAGGTGCTGGATTCTGACTTCATTGATGACTCCGACTCCCCTCTGCAGAATTCAGAATCTCAGAATCTCTTGCTGCGTAGGTCCAAAAGGCACCAGGTCAAACATGACGATGATAATGATACTTGGTGCGATGACTGCTATGAGATTTACTCTGGAGAATGTCCTCAACATCGAGTGCAGACCATCAGTGATAAACCCGTCCCAGCTCGAGCTTGGGCTAGCCTTCCTGGGGTTTACCTTGCAATCTCCAAGCTACCCAAAGCTGCTGGAATGGGAGTGTTTGCACGCAAGACAATTCCCAGACGAACCCAGTTTGGTCCTCTTGAAGGAGTAATGGTAAAGGAAGAGGAATTTTCTATCATAGATATCGAGGAGACTCGACTTAAATTGACAATCGAATTGGAGAACGGAGAGTTTGCTATTCTTGATACATCTAGTGAAAATCACTCAAACTGGATGAGATTTGTACGCCCTGCTCGCTGTTATGCAGACATGAACCTCGTGATAAGTCAACAGAATGGAGCACTGTTCTACACCACAACCAGAGCAATACTGCCTCGTCAGGAGCTGCAAGTCGGCTACGGTGTGGCGTATGCTGCTAAGCGTAATTTACCTCTCCTTGAGCCAAATTCAGGCATAGTTGAGGAGGACACGGAGAATGCTTGGCCTTGTTTTGAGTGCAACGAACTCTTCTCTTCTTCTGAAGGCCTAGAGAAGCATTTGACAAATCATGATAACGAAAGGGAGGATGAAGAAGAAATAACAAAGTCTAGGGTGAAGAAGACAACTAGGACGGGAAAGAGGAAGGTGCTCTCTCACTTGCCAATCAAGAAGTACAAATCTGAGGAGAGTGGGAGTGACGAGGGAGAGTTCAGGTGTGGCACCTGCTCTCGCAACTTCCCACGCAGTCAGAGCCTGAAACGACATTTGCTTCTGCATTCAGAAGACAACAGTGATGAAGTGCAAGTGTCTCATCCTTTCACTAGAGAAAAACCAATCAGGAAGACTCAAAAGAAGGATGAAAATGGTGATGCCACTACTGGCCAACTAGTGACGTATCTCAAACAAAAGAACTCTGGGGAGGAGGGCACTTGGCTTTGTGCTCACTGTCACCTGACCTTTGACACGGCGTCCATGCTCAATCTGCACACACTGGCCCACGCTGCTGAAGATTTGGAGGAGCAGAACATGGAAGATGATGAGGAGGATCTGGATTCCTCGGGTGAAATGCAGCAGTGTCCTCAATGCTCTCAGCAATACACATCCAAGAGAGAGTTAGCAGAACATACGTCAACTCACGGCAAAGTTCTGTTGCGCAAGTTCCGAGGTGTCATCAACCCTGCCAAGCCTTACAAGTGTGAACTATGCTACAAGTCCTTCGCCACAGAGGACAGACTTCAGCGTCATATGTTGGTGCACGGAACAGAGGAGTCGAAGCCCTTGCAGTGCGAGACGTGTTTCAAACGATTCCTCAACAATTCAGCCTTGGCTTGCCATGTCAAAATTCACACAGAGGAGAAAAAATCCTTCGAATGTCCGATTTGTCGCACATGTTTTGATCAAGTGATGGCTCTCAAAGATCACGTCCATGTTCACTCCAACGATGGCATGTTTACCTGTCCTCACTGCACGAAGGTGTTCTATGGCTACAGTCTCATCCGTAAACACATTCGAGCGTTCCACAGTGAACGTAAACACACTTGCTCCTCGTGTGGCAAGTTGTTCCCAACCCTCGACAAATTGCGAATGCACATGTTGAGGCACTCAGATCATCGGGAGTTTCTCTGCGCTAACTGTGGCAAGCAGTTCAAGCGCAAGGACAAACTTAAGGAGCACATGAAGCGAATGCACTCTGCAGAGCGAGAAGCTAAGCTTGCTCAGAAGCCAAGTCGGCAAGCATCTGCCAAGAAGTTTATACCCAAGGTATCACCAACAGACTACCACCGCTTCATCTACAAGTGTCACTCCTGCCTATTGGGCTTCAAACGCCGCGGCATGTTGGTGAACCACTTGGCCAAGCGTCATCCTGACATCAGCCCTGAGTCAGTCCCAGAGCTTAACCTACCCATCCTGAAAACCACCAGAGATTACTACTGCCAGTATTGTGACAAGGTCTACAAAAGCAGTTCCAAAAGGAAGGCCCACATTTTAAAGAACCATCCTGGCCTAGAGTTGCCCATGAGTAATCGCCGAAAGGGAGGAGTGCCTGAGATCCCAGGAGTACCGAACCCTACATTCTCACAGACAGTGGGCAGCATCACAACTCACCCTCATGGGTGTCCCTGGTGCCACAAACAGTATGCCAGCAAGGCCAAACTGCTGCAGCATCAGCGCAAGAAACACCCAGAGCTGCTGCCACACCACAGCCAGCAGGTCAGCAGTGATGGAGACATGGACATGGACGCTTGCAGCCCACCTTCAACTCGCACAATGTCGACACGAGCACAGCACAATGCCATGTGCTCAGATAGTAGCTCAGAGGGGGAGAGCAAGTTCAGCAAGTTTACAGCAGGCAAATTTTTGGTGACCAATTGTGGCGAACAGGTGGATGTGATTCAGTTGACGGGTGAACTTGCTTCCCATGTCAACATTCTACCTGCAGGAGCGACAGGAACAGTTGAATACCAGATTGCTACAGAACAGGAGCTGCAAGCGCTTCAAGAATCAGGCATTATCATAGATGCTTCAGCCCTTAAAAGGCCAATGAAGGGTTGCATTGAAGGAAACGACATGCTGTCCCAGGCCATGTCAGAACTTAGCCAGTCTCTGGCAGAGTTCCGAACTGTACCTGTCTCCGATGGGAGTGATGGCCAGGAACCCTTTATGAAGATCTTACACACGGGACATATCATGGTCACACAAGCGTCTGATATGCTTTCTGCTGGTTCAAACTCTCAGCTTGTTGATCAGTCCAATTCAGcgGAGGCAGCCTCACAACTGAGACAGCTCTTGACAAACTCGTCGTATGGTTCGCTGCCCCCAACGCCACCACCATCCACAGGCAGCCAGCAGCAATCGCTGACCATCTTGCCCCGAGGTTGGGCAGCCACATTCACCTCCTACACAGCGCGCTGA
- Protein Sequence
- MDNSGSQGPPGEVDGCKSDQGSPLPSQEAAELDWTTATTSHLEQVEYVEEAPIEYGRASFTNFEPATPFSPQQSTSMDYEHRVSPLDPNMSSAARYSPVYSISTSLAVHHSPSHNLAISNPSSPFPGTVGIPNPNSPISSTNNPIDYRQRSHHHHHQNPTPSTSYATAVLRNPDSPIAGPSGLLRQAFFHSDRLTPSPSPQSPLQAPMTPSDNFVSSSTGPSDDTNPMMADTSDLRYLTQTSDSNSILDPKVDSTREVATPLHDSHEMDSSSPPGSYGHEATPVDSRDDDEGIGKSPDSQHVEVLIGYETIRIVEPEARFIASAAESYLAAAAAEGNSMDPLVVALKGRGSLVFNPEGLTRAELLGLKSRGLLMEPGGSTGTSNASLPLLLDSSIAAGLKAEGLVLEDMPGLEDATDDGLEGEDTVLETLKTRSTLEEQQLLAAQCTPHAPTMDTDGNLSSTSLSCSPSAFCDDSSHMADLSEEGLSHLASHGVVLLSGRTQLEVNGKHHTDSEVLDSDFIDDSDSPLQNSESQNLLLRRSKRHQVKHDDDNDTWCDDCYEIYSGECPQHRVQTISDKPVPARAWASLPGVYLAISKLPKAAGMGVFARKTIPRRTQFGPLEGVMVKEEEFSIIDIEETRLKLTIELENGEFAILDTSSENHSNWMRFVRPARCYADMNLVISQQNGALFYTTTRAILPRQELQVGYGVAYAAKRNLPLLEPNSGIVEEDTENAWPCFECNELFSSSEGLEKHLTNHDNEREDEEEITKSRVKKTTRTGKRKVLSHLPIKKYKSEESGSDEGEFRCGTCSRNFPRSQSLKRHLLLHSEDNSDEVQVSHPFTREKPIRKTQKKDENGDATTGQLVTYLKQKNSGEEGTWLCAHCHLTFDTASMLNLHTLAHAAEDLEEQNMEDDEEDLDSSGEMQQCPQCSQQYTSKRELAEHTSTHGKVLLRKFRGVINPAKPYKCELCYKSFATEDRLQRHMLVHGTEESKPLQCETCFKRFLNNSALACHVKIHTEEKKSFECPICRTCFDQVMALKDHVHVHSNDGMFTCPHCTKVFYGYSLIRKHIRAFHSERKHTCSSCGKLFPTLDKLRMHMLRHSDHREFLCANCGKQFKRKDKLKEHMKRMHSAEREAKLAQKPSRQASAKKFIPKVSPTDYHRFIYKCHSCLLGFKRRGMLVNHLAKRHPDISPESVPELNLPILKTTRDYYCQYCDKVYKSSSKRKAHILKNHPGLELPMSNRRKGGVPEIPGVPNPTFSQTVGSITTHPHGCPWCHKQYASKAKLLQHQRKKHPELLPHHSQQVSSDGDMDMDACSPPSTRTMSTRAQHNAMCSDSSSEGESKFSKFTAGKFLVTNCGEQVDVIQLTGELASHVNILPAGATGTVEYQIATEQELQALQESGIIIDASALKRPMKGCIEGNDMLSQAMSELSQSLAEFRTVPVSDGSDGQEPFMKILHTGHIMVTQASDMLSAGSNSQLVDQSNSAEAASQLRQLLTNSSYGSLPPTPPPSTGSQQQSLTILPRGWAATFTSYTAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -