Edan013052.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ497715.1:862555-866152[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.017 1.1 9.8 0.6 1 23 228 251 228 251 0.95 2 17 0.00065 0.044 14.3 0.7 1 23 257 279 257 279 0.98 3 17 4.5e-05 0.003 17.9 0.7 1 23 285 308 285 308 0.96 4 17 0.089 6 7.5 9.1 1 21 316 336 316 338 0.94 5 17 0.00019 0.013 16.0 0.7 1 20 346 365 346 367 0.94 6 17 0.00042 0.028 14.9 2.7 1 23 375 397 375 397 0.99 7 17 0.0061 0.41 11.2 0.6 1 23 403 425 403 425 0.97 8 17 0.18 12 6.6 3.2 1 23 431 453 431 453 0.98 9 17 0.0079 0.53 10.9 0.9 1 23 710 733 710 733 0.96 10 17 0.00012 0.0078 16.6 1.0 1 23 739 761 739 761 0.98 11 17 0.0002 0.013 15.9 2.5 1 23 767 790 767 790 0.96 12 17 0.051 3.4 8.3 8.2 1 23 797 820 797 820 0.97 13 17 6.6e-05 0.0044 17.4 1.5 1 20 828 847 828 849 0.94 14 17 0.0025 0.17 12.4 2.1 1 23 856 878 856 878 0.98 15 17 0.0064 0.43 11.1 1.3 1 23 884 906 884 906 0.98 16 17 2.1e-05 0.0014 19.0 1.2 1 23 912 934 912 934 0.99 17 17 2.4 1.6e+02 3.0 0.0 1 13 940 952 940 954 0.84
Sequence Information
- Coding Sequence
- ATGGTTCTGTCTTTGTGCATGGGACAAGATTGGTTTGCCGCTAATGCAAATGATGAGTCAAGAAAGGGGGATGATGAGGATGAACTTGGGATCAAAATTGAGCAGCCAGTTAGTGAGGACGAGACTTCCATGGAAAATGTTTGGATTCCCATGGTTCAGATGGAGGAGAGTAAAACCATTTTTACCCCTGTGGATTGTGATGAGAGGGCGTCAAATGTTGAGGAGATTGCGGCACCAACAATACCTCCTCGCGCAGTAAATCTAGGGCAAAACTACCCTGAAGTTTCCTCAGCAAACTTAGTGCAAACTACCCCGTTGAATTATTCTGAATGTATGCCTCCCCCGGCAAATTTGATGCAAACGACTCCATTGAACTACCCTCTACCTATGTATAACCCCAACACTAACCCTGTGCAACAAAACGTACCCCCACCTCAGTATGCCATCATTCAGTACCTCAACCCTGCTGCAAACCCTCAACTGTCAAATATTATCAGTATAAGTCCCAGTGGGCAAGCAAAAGTTTTGTTGCCTAGATTGCCACCCAAGGTACAGAACACCAATAAGAAAGTGCCAATGCCAGCAAAAGTCAAGCCAACTAAAAATGTCGGGGAGAAAAGGAAAAGGAGGGCCCCCGGTGAACCCAAACCAAAATACAAACGGAAACCACCCACAAAAATGTACCATTGTGAGGAGTGTGGGGGTAACTTCCGGAACTGGTCGATATTCCGAGGTCACCAGATCAGAGTGCACGATCACAACACTCGCTACGTATGCTCGTTCTGCGGCAAGAAGTGTGCCGCCTCGACTGCTTTGAAAGCTCACGAATTGACACACACGAAGGACTATAACTTTCCTTGCGACAAGTGTGATGCCAAGTTCACAACTAAATTCACATTGCAGCTGCATATCATCAAGGAGCACGAGAAAAACATAGAGGAGAAGTACTGCTGTGTGGTGTGCAAGCAAACGTATAAACACAAGTACCTGTTGCAACGACACTTGAAATGCCACAGACCCACCATCCTCAAGAGTTACCCCTGTTCACACTGCAACCGTGTGTACTTCTCCAAACCTCAGCTTAAGAAACACTTGGAAATCTTAACAGGGACagtgaaaaaatacaaatgcgACTTCTGTGAGAAAGAGTACCGCCAAAAGCATGAAGTGGGCAAGCACATAATGACTCATCTGAATCTCCGCCCATTCATGTGTGATCAGTGCCCCAAGAGGTTCCTCACCAATGATGTCCTCATGAAACACAAGCTCATACACACTGGAGAGAAACCCTACAAGTGTCGTTTGTGTGACAATAGTTTCAATGCGTTTTGTATCCTGCTGAGACACATGAGAATGCATAACAATGCACCCGTGTATGCTTGTTCCACTTGTGGAGAAGGGAgtttaaaatatgacatttttcacaGAGACAATTCGGAATCTAGTGCTGCTGCTATTTTAATTACACAGTGCATGCAACAAGATGGTTTTGCTGCTAGTTCTAGTGAGGCGAGAGATGGAGAGTTCAAAGTTAGCAAGGACACTTGTATCGATGAAAATTGGATCAAACTGCACCAAAGCAAAGAAGTAACCAATGTTGTTCCCTCAATGGATTCTGACCCAGCTGAGGTAGCCCAGCCCTCAACTCCAGTTGATTTTTCTTTGGAAATTCCTGTAAAGGAGGAGCCAACTGACCCTTCAGATGGTTTGAATTCTCTGTTGACAGCATCTTCATCCATCAGCCCCTTGGCAGTGTTTGACATAAGTATGAACTCTTTGAAgcagaatttaaaatcaaaatttactgaAATGCAGCTTAAAAAATCTAAGCATACGGATATCAATGTTTTGAAGCaaaaattacaatcaaaatttaaatccaCATTAAATAACCCTCAACCATTGAATATCAATATTCAGACAAAGGCCATGTTGACAAATGAGGCAAAGGAGTCGCAAGGTATGGAAAATAACAGTAACTCTAACCCAACATTTGATTCAAATCCTGATGTTAATATGCATAAGAGAGTAGGCACTAAGAAAAGGAAGGAAGCTGCTTGTTCCGAAAGTGTTGTGGATCATCCTCAGGCCCATTGTACTGGATGTGACGTACCGTTCccaaaaatgtacaattgtaAGGAGTGTGGTGGTAATTTCCGTAACAAGCTGGTGTTTAGAAGTCATCAGATAAAGGTTCATGATCACACCTCGCCATACGTATGCTCGTTCTGTGGCAAGAAGTGTGTCAATGCGCAAACCTTGAAGGCTCATGAAATGATCCACTCTGGGGAGCATCCCTTCCACTGTGACAAGTGCGGAGCCAAGTTTTCATCTCGTTCCAGCATCACAATACACATGCAAAACAAACACATTGATTCAGGAAAAACACATCGCTGTGTTGtgtgcaagaaaaaatataaaaataaattctttttgtcACTGCACATGAATAAATGTCACAGACCAAGCATCATCCAACTATTTCCATGTACCCACTGCAATCGTAAGTTTACAACAAAGTTTCTTCTTAAAGAGCACCTAGAGATTTTGGCAGGGAAAAGAGTGTACAAATGTGTCTCTTGTGGGAAGGAATGTAACGGGAGAGGTTCGTTTAGGAGCCACATGCAACTCCATTCGAGCCACTGTCGCTACAAATGTGATCTGTGTCCCAAAAGCTATTTAAATAAACCATCGCTGTACCAGCATAAATTGAAACACACAGGAGAGCGACGGTTTCAATGTCGTTTGTGTGATAAAAGCTTTTATTCGTCCGGTATCTTGCTGAGACACATGAGAATGCACAACAACGCAGCTATGTATGCTTGTCCTACCTGTGGAGAAGGCCTGAGATCAAAAGCAGAAgGAATGTTCATTATATGTATGTTaggttattcattttttcaaacaatttggattgaaaataataatccaaCTTTACAGCTAATTGATTTTCTTCCCCATggaattttaaattatttaaaagctaTTAGGATTGCTGAAAAGTTTAGCTAA
- Protein Sequence
- MVLSLCMGQDWFAANANDESRKGDDEDELGIKIEQPVSEDETSMENVWIPMVQMEESKTIFTPVDCDERASNVEEIAAPTIPPRAVNLGQNYPEVSSANLVQTTPLNYSECMPPPANLMQTTPLNYPLPMYNPNTNPVQQNVPPPQYAIIQYLNPAANPQLSNIISISPSGQAKVLLPRLPPKVQNTNKKVPMPAKVKPTKNVGEKRKRRAPGEPKPKYKRKPPTKMYHCEECGGNFRNWSIFRGHQIRVHDHNTRYVCSFCGKKCAASTALKAHELTHTKDYNFPCDKCDAKFTTKFTLQLHIIKEHEKNIEEKYCCVVCKQTYKHKYLLQRHLKCHRPTILKSYPCSHCNRVYFSKPQLKKHLEILTGTVKKYKCDFCEKEYRQKHEVGKHIMTHLNLRPFMCDQCPKRFLTNDVLMKHKLIHTGEKPYKCRLCDNSFNAFCILLRHMRMHNNAPVYACSTCGEGSLKYDIFHRDNSESSAAAILITQCMQQDGFAASSSEARDGEFKVSKDTCIDENWIKLHQSKEVTNVVPSMDSDPAEVAQPSTPVDFSLEIPVKEEPTDPSDGLNSLLTASSSISPLAVFDISMNSLKQNLKSKFTEMQLKKSKHTDINVLKQKLQSKFKSTLNNPQPLNINIQTKAMLTNEAKESQGMENNSNSNPTFDSNPDVNMHKRVGTKKRKEAACSESVVDHPQAHCTGCDVPFPKMYNCKECGGNFRNKLVFRSHQIKVHDHTSPYVCSFCGKKCVNAQTLKAHEMIHSGEHPFHCDKCGAKFSSRSSITIHMQNKHIDSGKTHRCVVCKKKYKNKFFLSLHMNKCHRPSIIQLFPCTHCNRKFTTKFLLKEHLEILAGKRVYKCVSCGKECNGRGSFRSHMQLHSSHCRYKCDLCPKSYLNKPSLYQHKLKHTGERRFQCRLCDKSFYSSGILLRHMRMHNNAAMYACPTCGEGLRSKAEGMFIICMLGYSFFQTIWIENNNPTLQLIDFLPHGILNYLKAIRIAEKFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -