Basic Information

Insect: Ephemera danica
Gene Symbol: RREB1
Assembly: GCA_000507165.2
Location: KZ497860.1:17660-57952[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.8e-06 0.00019 21.7 0.2 1 23 170 192 170 192 0.98

2 17 3e-05 0.002 18.5 0.2 1 23 211 233 211 233 0.98

3 17 7e-06 0.00047 20.5 3.0 1 23 239 261 239 261 0.99

4 17 0.011 0.75 10.4 0.7 2 23 332 354 331 354 0.90

5 17 0.069 4.7 7.9 0.7 1 23 409 432 409 432 0.83

6 17 0.076 5.1 7.8 0.1 1 23 547 569 547 569 0.97

7 17 0.00031 0.021 15.3 0.9 1 23 576 598 576 598 0.99

8 17 0.013 0.9 10.1 5.0 1 23 604 627 604 627 0.97

9 17 2.2 1.5e+02 3.2 0.1 1 23 653 676 653 676 0.83

10 17 0.0025 0.17 12.4 2.0 1 23 945 968 945 968 0.95

11 17 7.2e-05 0.0049 17.3 1.3 2 23 1168 1189 1167 1189 0.97

12 17 0.19 13 6.5 5.4 1 23 1195 1218 1195 1218 0.96

13 17 0.024 1.6 9.4 1.7 1 23 1257 1281 1257 1281 0.95

14 17 0.0009 0.061 13.8 0.6 2 23 1355 1376 1354 1376 0.96

15 17 0.15 10 6.8 0.8 1 23 1381 1404 1381 1404 0.97

16 17 0.016 1.1 9.9 0.5 3 23 1462 1482 1460 1482 0.93

17 17 0.0025 0.17 12.4 5.0 1 23 1488 1510 1488 1510 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.8e-06	0.00019	21.7	0.2	1	23	170	192	170	192	0.98
2	17	3e-05	0.002	18.5	0.2	1	23	211	233	211	233	0.98
3	17	7e-06	0.00047	20.5	3.0	1	23	239	261	239	261	0.99
4	17	0.011	0.75	10.4	0.7	2	23	332	354	331	354	0.90
5	17	0.069	4.7	7.9	0.7	1	23	409	432	409	432	0.83
6	17	0.076	5.1	7.8	0.1	1	23	547	569	547	569	0.97
7	17	0.00031	0.021	15.3	0.9	1	23	576	598	576	598	0.99
8	17	0.013	0.9	10.1	5.0	1	23	604	627	604	627	0.97
9	17	2.2	1.5e+02	3.2	0.1	1	23	653	676	653	676	0.83
10	17	0.0025	0.17	12.4	2.0	1	23	945	968	945	968	0.95
11	17	7.2e-05	0.0049	17.3	1.3	2	23	1168	1189	1167	1189	0.97
12	17	0.19	13	6.5	5.4	1	23	1195	1218	1195	1218	0.96
13	17	0.024	1.6	9.4	1.7	1	23	1257	1281	1257	1281	0.95
14	17	0.0009	0.061	13.8	0.6	2	23	1355	1376	1354	1376	0.96
15	17	0.15	10	6.8	0.8	1	23	1381	1404	1381	1404	0.97
16	17	0.016	1.1	9.9	0.5	3	23	1462	1482	1460	1482	0.93
17	17	0.0025	0.17	12.4	5.0	1	23	1488	1510	1488	1510	0.98

Sequence Information

Coding Sequence: ATGCAGGACACGCCAGCTGTTGGGGGTGCTCAAGGTACCACCGCCTCGGCGCCATCCCCGTCAGTGTCCTCCGTGACCTCGGCCTCACCTCTACACACACCACCCACAAGAAGGACTAGACTGTCTGACTCTGCGAAACCTCAAACAGATTCTACTGAGTCGCAAAGCAGTCCGAGTGAGGCTCGTGCAGAAGAGACGAGTCCCAACACGTCATCGAGTGGTTCCGAGGCAGCTGCCCCACTCCCTGCTAGTCCACCCTCGTGCACAGAATCACCGCCCCCGCAACCTGTTTCCGCGTGCAGCGAGGAGACTGGTCTCACTGGGGCACGCAAAAGGAAAGCACACCGCGTGGTCAAACGAGAGACCCCAAGCGAAGGAGCATGCACCGTGAGCAGCGAGGAAACGGCTGCTGACGCTGCAGAGGACGAGGCTGAAGCCGCAGCAACAGCCTCTGATCGCGGCAGCTCGAGTGAGGACGCAACCAACAGTGAAGACGCAGACGTACGTTACGTCTGTCCAGTGTGTGACCAAGTGTTCGTGTCCCAACACGAGTTCACTGTTCACATCCGAGCACACAACGAGGCGTCAGGAGGCACCACTACTCCTCCCACAGCGGCCAGTAGCAAGGTGTTCAGTTGCAGCATTTGCGGCAAGTTGCTGAGCTCCTCGAGCTCTCTGGACAGACACATGTTGGTGCACTCGGGCGAGCGGCCCTTCAAGTGTCGCATTTGTCAAGTGGCGTTCACCACCAACGGTAACATGCATCGTCACATGCGCACGCACAACAACAACACCAGCAGCGTCAACAACAACCACCAACAACTGCAGCAAGGTGACAGTGACGGTGGCAGCTCAGACAGTATGCCAGAGAAAAGTCGCAAGCGACGCTCGAATGGAGATCTGAACGTGCCATCCCCAAAGAAACGCATCGAGGAAGGCTCAGCGTCTCCACCAGCAGCTGCAGTGCCTCCAGTGTCATGCCAGGCCAGTCAGCGGTGTGACAAGTGTTTCATGAGCTTCACGTCCGAGCGAGAGCTCACGCTGCATCGTTACGCTGCCCACGCCCCGCACGATGACGACCCCATGTTGGAGGAGAGCACGAAACCAGCACAGGTGGGCTTCAAAGATCTCACATTCGTCGACTTCTCGACTGAAAAGTTTCCTCTGATCGCTCGAGCCTTCTGTGAGCGCTCAGTGCACAAAGCCAGTTCTGCATTTCATCGTTTTCAGTGTGAGGAATGTGGACGAGCTTTTCCATGTGGCAGTGCGCTGCATATCCACGTCACCAACGCTCACGGTGAGGGTGCCCCTCGAGATCTGAGCTGTCCCAGACGTAAACTACATTACGAGGAACGCAAGCAGGATTTCTTTGCAGGACTGGACCTGCAGACGACGAGCCCCACGTCCTCGCCCCCTCCAGCAAACACGCCATCTCCCATCAAGGTCCGTGCTCTCAGTGAGCTGGCCACGCCTCGTTTATCAGAGTACACCACAGAGTCTCGCACTGAGGAAGCGCCGCGAGACCTTGCTGACATTCCCAGTATCCTGTCAGTGGCGAACAGAGGAACTCTCGACCTCGCTCGTTCCCCCAACTCCTCGTCTGACGAGGGTCTACGTCAGATGAAGCTGCGAGGAGAGTTTCCGTGCCGACTTTGCACGGCCATTTTCCCCAACCTGCGAGCCCTGAAAGGTCACAACCGTGTCCACCTGAGCACTGGACCTCCGTACTACTGCAACATGTGCGTGTACACGAGCAACGACAAAGCCACCCTGGTGCGACATCTGCGTACACACAATGGAGAACGACCGTTTGAGTGCCTGCTGTGCCACTACGCGTTCACCACCAAGGCGAACTGTGAGAGACACCTTCGCAACCGTCACAACAAGATGACACGAGATGAGGTTCGTCGCTCGATCGCTTGTCACTTGGGCGAAGAGATTTCTCCAGAGCGACCTCACGAGTGTGCTGCCTGCGAGCGTACCTTCCCCTCTCGCTCTGCCGCACTGGGTCACGCTGCTCGCGAGCACCCTACTCTGGTGGCTGCCGAGCTGGTGCGGCTAGGAGCTGACCCCGAGGAGATAGAGGACGAGGAGGAGCTGATGATGTCTCCAGGCAACTCTCCGCGGCCTGACCGAGACATGGAGCACGAGCGTAGCTCCAGCCGCGGCAGTTGTGCCAGTGACGACGAGCTGCAGCATCCTCGTCCCCCTTCTCCACTCGACCTAAGCATGGACGCTCTGGACCTGAGCAAGAAACCGTCACCTCCAGTTGTGCAGGCCGCCAACAACACTGCGCCGCCACAGGACGCCCCTCAAGATCTCACCAAACCCAAAGAGGAGCAGAAGAAGCAGCTTCCTGCAGTGATGCCACACATTCCTCACATCCCTCACCCCTTCTTGTCTCATCACCCAGGGCTGCCAACACCGCCACCTCCCAGTGCTTTCTTCCCCAACCCTCTCAGTATGTATCTGAGCAGTCCATTCCAAAGACCTCCCTTCCCATTCTACATGCCTGCACTGTTTGGCAGTAGTCCTTCTCCAGCTGCCACCCCTCCACCCCCTCCTCCAGCAGTCCCTGTCTCCTCAGCTCTGGACGAGGTCAAGGAGCAGTTGCAGAAAGAGTTGATCCGCGGCCTGCAACTCACCTCAGGCGGCTCTATTGTGATGGATGCTCTCCGTAAGCAGCCAGTTCCAGAACCACCGCGCAGTCCACCAGCGTTACCGCAACCACCACCGCCTGAACCTCGAGCTGAACCACCTGTGAAGATGGTCATCAAGAACGGCGTGTTGATGCCCAAACAGAAGCAGCGGCGCTACAGAACAGAGAGACCATTCGCGTGTGAGCACTGCTCAGCTCGCTTCACGCTGCGATCCAACATGGAACGTCACGTCAAACAGCAACACCCTCAATTCTGGAGCCAGCGACCTCGTGGAGGACGACGTGCAGCCAGTAGCaccagcaactcgcgtggtgcTCGTGAACCCTCGCCACACCCACCTCCGCAGCCTGAGATCACGCTGCTGGGAGAATCTCGCATCTCTGATGAGGTGAAACTGGCGTTGTCTCAGCAACTAAAGCAGAAGCATTTGGGCGAGAACGACTTGCACGAGCGACGACTGCAAGCTGCGCGTGAGGAAACTGCAGCTGACGGTGATGGCGAGGACGAGGAAGAAGAACCTGAGCTGATCATTGACGAGGCGCCCACAGTGCGTCGCGAGCCTCGAGGAGAAGCTGACGCCGACCTGGCAAGCGTGTCACGTCTCCTGGTGAACGCCTCTGCGCAGAGTTTCCAGCAGTTCTTCCCTGAGGAAgacgaggaggaggaggaaggtTTCATGGAGGGAGACGAGGAAGATGAGGGCATGGACGAAGATGGCAGCAGCAGTGAGGGCGGACCAATCACCAGTGGTGACGAGGTGGCCTCACACGCAAGCACACCTCGCAGTCCGAGCGGACGAGAGAAGAAGAAAAGTGCTTACTCAAGCGCACCAAATCGCGTGTCGTGTCCCTACTGCCACCGCAAGTTCCCGTGGTCTAGCTCGCTACGACGCCATATTCTCACTCACACCGGCCAGAAACCCTTCAAATGTGCTCACTGTCCGCTGCTGTTCACCACCAAGTCCAACTGCGACAGACACCTCCTGAGAAAGCACTCCAAGAAGAGTGCCTCTCCTCCGTCCTCTGCTCCATCCACTCCAATTCCTCCTCCACCCCCTCCACCACCTTCTGAAGACAGCTATCTGATGCGAAACGTTCCTGAAAGACCCTTCAAGTGCAATCTCTGCCCCAGTTCCACCTTCTCCACGGAGCGAAACCTACGGAAGCACGTTTCCAGCAAGCATGCCAACAAACGTGCGTTGAACTCTCCTCCCACGCCATCTGCATCCTCTACCACGTCAACCACGACTCCACCGAGCAGTGGCAAAGACGCTCAAAGTACAGGAGACAGTGGACGCGATGTCAGTCCTGATCCTCTGCCTCCCAGCAGCAGTGACAGTGGCGCCTCTCCTGACCAAACAGCCGCAATCAACGTGCCCTCTGTGGCGACGGTCACTGGCCTCACGTGCTACAAGTGCAACCAGACCTTCTCCAGCGAGGCTCGTCTCACTGCTCACCTCGAGTCGCACTCTGACCTGCCCTTCAAGTGCCACTTGTGTGAGAACAGTTACGCTGAGCGCCAGGAGGCATTGGAACACATTCGATCGTCACACGCCGCCGAGTTCGAGCTGCTAGTGTCCAAGGGTGCCCTCGATCCTCATGCCGAGGACTGCACGGCCAACCCGCCACCCACGcaccacaacaacaacaacaatgagGGTGGCGATGACGCACTGGAGACGCTTCGTGGAAAATTCCCTGACTACGCCAATCGCAAGGTGATGTGCGCCTTCTGTATGCGACGTTTCTGGTCAGCTGAAGATTTACGACGCCACATGCGCACTCACACTGGCGAGCGTCCGTTCACATGTGACATTTGCTGGCGCAAATTCACTCTGAAGCACTCGATGTTGCGTCACCGCAAGAAACACGCTGGCGGTGGAGGCTTGGGTGTCGGCAGCCTTGGTCCCGCCTCGGTGGCGAGCTCAGTGAGTGGAGCTGACCAGGTGTGCAGCGACGACGACGCGCACTCCATCGAGTCTGGAGAGCGAGCCACCAGAGATAGTCTGCGGCGCTGGGCCGAGGGCCTCGCAGTGTACAGTGGCACAGGACGTCTCTCCAGCCTCCGTGCGGACCAACCAGGAGGAGAGGATGACCTGATTGGCAACCTGCTAGGTATCAAAGACCGAGCAATCATCGATCACATGCTTTCAAAGTCTGCTGACGATGCAGCCAAGTTACTCGGAGTTTCTAGCCAACGTTAA
Protein Sequence: MQDTPAVGGAQGTTASAPSPSVSSVTSASPLHTPPTRRTRLSDSAKPQTDSTESQSSPSEARAEETSPNTSSSGSEAAAPLPASPPSCTESPPPQPVSACSEETGLTGARKRKAHRVVKRETPSEGACTVSSEETAADAAEDEAEAAATASDRGSSSEDATNSEDADVRYVCPVCDQVFVSQHEFTVHIRAHNEASGGTTTPPTAASSKVFSCSICGKLLSSSSSLDRHMLVHSGERPFKCRICQVAFTTNGNMHRHMRTHNNNTSSVNNNHQQLQQGDSDGGSSDSMPEKSRKRRSNGDLNVPSPKKRIEEGSASPPAAAVPPVSCQASQRCDKCFMSFTSERELTLHRYAAHAPHDDDPMLEESTKPAQVGFKDLTFVDFSTEKFPLIARAFCERSVHKASSAFHRFQCEECGRAFPCGSALHIHVTNAHGEGAPRDLSCPRRKLHYEERKQDFFAGLDLQTTSPTSSPPPANTPSPIKVRALSELATPRLSEYTTESRTEEAPRDLADIPSILSVANRGTLDLARSPNSSSDEGLRQMKLRGEFPCRLCTAIFPNLRALKGHNRVHLSTGPPYYCNMCVYTSNDKATLVRHLRTHNGERPFECLLCHYAFTTKANCERHLRNRHNKMTRDEVRRSIACHLGEEISPERPHECAACERTFPSRSAALGHAAREHPTLVAAELVRLGADPEEIEDEEELMMSPGNSPRPDRDMEHERSSSRGSCASDDELQHPRPPSPLDLSMDALDLSKKPSPPVVQAANNTAPPQDAPQDLTKPKEEQKKQLPAVMPHIPHIPHPFLSHHPGLPTPPPPSAFFPNPLSMYLSSPFQRPPFPFYMPALFGSSPSPAATPPPPPPAVPVSSALDEVKEQLQKELIRGLQLTSGGSIVMDALRKQPVPEPPRSPPALPQPPPPEPRAEPPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFWSQRPRGGRRAASSTSNSRGAREPSPHPPPQPEITLLGESRISDEVKLALSQQLKQKHLGENDLHERRLQAAREETAADGDGEDEEEEPELIIDEAPTVRREPRGEADADLASVSRLLVNASAQSFQQFFPEEDEEEEEGFMEGDEEDEGMDEDGSSSEGGPITSGDEVASHASTPRSPSGREKKKSAYSSAPNRVSCPYCHRKFPWSSSLRRHILTHTGQKPFKCAHCPLLFTTKSNCDRHLLRKHSKKSASPPSSAPSTPIPPPPPPPPSEDSYLMRNVPERPFKCNLCPSSTFSTERNLRKHVSSKHANKRALNSPPTPSASSTTSTTTPPSSGKDAQSTGDSGRDVSPDPLPPSSSDSGASPDQTAAINVPSVATVTGLTCYKCNQTFSSEARLTAHLESHSDLPFKCHLCENSYAERQEALEHIRSSHAAEFELLVSKGALDPHAEDCTANPPPTHHNNNNNEGGDDALETLRGKFPDYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFTCDICWRKFTLKHSMLRHRKKHAGGGGLGVGSLGPASVASSVSGADQVCSDDDAHSIESGERATRDSLRRWAEGLAVYSGTGRLSSLRADQPGGEDDLIGNLLGIKDRAIIDHMLSKSADDAAKLLGVSSQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -