Edan012877.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ephemera danica
Gene Symbol
-
Assembly
GCA_000507165.2
Location
KZ497967.1:122551-131245[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.3 21 5.9 2.2 1 23 216 238 216 238 0.94
2 16 1.1 76 4.1 0.1 2 23 258 280 257 280 0.94
3 16 4.7e-05 0.0032 17.8 0.8 1 23 389 411 389 411 0.99
4 16 0.016 1.1 9.9 1.0 3 21 420 437 419 438 0.95
5 16 4.8e-05 0.0033 17.8 2.3 1 23 445 468 445 468 0.96
6 16 4.6e-05 0.0031 17.9 1.4 2 23 474 495 473 495 0.97
7 16 0.00041 0.028 14.9 0.4 1 23 501 523 501 523 0.96
8 16 0.1 6.9 7.3 3.7 1 23 529 551 529 551 0.97
9 16 0.0015 0.098 13.2 3.5 3 23 559 579 557 579 0.98
10 16 5.1e-06 0.00035 20.9 2.4 1 23 585 607 585 607 0.98
11 16 3 2.1e+02 2.7 4.5 3 23 614 634 613 634 0.97
12 16 1.1 73 4.1 0.1 1 20 659 678 659 680 0.89
13 16 0.00017 0.011 16.1 0.5 2 23 689 710 688 710 0.97
14 16 0.053 3.6 8.2 3.7 1 23 716 738 716 738 0.96
15 16 1.6e-06 0.00011 22.4 2.5 1 23 744 766 744 766 0.99
16 16 1.1e-06 7.4e-05 23.0 1.1 1 23 772 794 772 794 0.98

Sequence Information

Coding Sequence
TTGGAGCAAACGTTTGTTCTTTTTATGGGTGCACCAATAAACATGAAAAACCCAGGAAAAATTCAGATGCATTCTTCCATCGATTTCCACCAACTGGACCCAGATGCTTGCAGGAGAGAGAAATGGTCCGAAGCTTGCCGCATGGTCAACCTGGTCAACAAAGACAGCATGGTTTGTTCAGACCACTTCGAACCACATCATTACCCCACCGCAACAAAATGTGCCGAGTTGTCTTCTGTGGACGCTGTACCTTCCATCCCAGCCCGGAGTGACAATGCTGTGCGATTTTCTAAAGGTGAGGTCATATACCCGATGATCGAAGACTGGGGTCCTCCCTTGTGCCGCTTGTGTGCCAAACCCGTCCTGCTGATGGCTGAGACAGAGCGCACGGGAGTCCACATCTTTGGTGCTGAAGCCCAGGAAATGAATTTGCTACAGAAAATCAACATGTACTTGCCACAGCCTGACTCTCTGCCCAAGTTTGTGTGCAGACTGTGTGTGACACGAGTTGACAACACTGTGGCAACCCTGCTGGACTTCAGACTGGCTGACAAACGACTGAGAGACGAGCTGGGCGCCAAAGGCAGTCTCAAGgATTTAGAAGCAGAAGGAAACCATGCTAGAAGAACACATAGCCCTCAAGGCTTCAAGTGTCACAGCTGCGAGCATTTGTTCAGGGACCTTCCCTCGTTGCTACTCCACGAACTGGACCACGCCAAGCCACCCACTCAGGCGTCTGCACTGAACAAGTCACAAGCTGTGTTGCCCATCCCGTGTTCCCAGTGTGCCCAGAGGTTCTTGTCCCCGCAGTCCCTGAGTCTCCACCTTTCCTCCGTGCACGGTCAGAAGTCGGCAAGTGACGATGCCGTCTTCCAGTGTTTGGACTCCAGGGAAAACAAGGAATTCCGTTTTGATCTTTCACACGAACTGTGCCACGTTCCATCAGTTGAATCTGAGGATGACAGGGGAAATAATGAAGTGGAGGAGAGACCATTCTCCCCACCACGGACTAGGCAAAAATCAAAGTTGAAGTCGTCACAACCATCTAAAAAGGAGGTGAAAACCAGGACTGAATTGACTGTAGGTACCGAACTGAACTTGAAAAATGAACCCACTGATTTTGCCTACATCAAAGTGCCAACCTTGGAGACAATTCAGGTGTCATACGAATGTTCCGACTGTTCCGAAGTGTTCACAGAAATCCAGACCTTCAAGAAACACATGAAGGTTCACACTGCGGAACGTAAGAAGCAGCTGTGTTCCCACTGCAACAAGTACTTCACACCCGCTGGACTGAAGACACACCAGCAACGAATTCGACTGAATAACGAGTACATCTGTGATCTCTGCAAGAAGGTGTTCAAAGACCGTCACTACCTAGTGATGCACATCAAAAACACCCACAATCCCAACAGACTGCAATGCAGCAAGTGTACACGAACTTTCAAGTCCAAGGAGGGTTTGCAGGGCCATCTGATGCGGCACGAAGGGATTTATAGCTTCCTGTGCGACATTTGTGGCATCAGTTTCCTGACCCAGTCGGCGATGAGGATACACCGGCGGAAACACACCCAGCAGAACTTCTTCACGTGTGAATACTGCGGCAAGAAGATTCAGGAGCACAACCGGTACCAGGACCATCTGAGGAAACACACGGGGGAGACTCCGTTTGGCTGTGAGCGATGTGAGCGCAAGTTCCACTCGAAGAAGTTGTTGAAGCAGCACATGCAGATCCACAACGACGTCAGGCCTCATCAGTGCCCCAAATGCAACATGTCGTTCAAGCGAGTCGGCAACTTGAAGCAGCACTTGGAGCGACACACAACGTACCGTCCCATTTGCAGCATCTGCAGAGCTTCGTTCAGTTGCTGTGAGGAGAGAAACGCTCACAGAAGGACTCACACAAAGGAAGAGAGGGAACAGGCGAAAATTGCGAGATCTCAACCCAAAGGTCCTAAACGAAACCGTAACCAATACCTTTGCAAAGCATGCACAACCATTTTCACAACGAAAGAGGAGAAAGCAGAACATCTAGCACAGAATCCATCCCACGTCAACAGTATCAAGTGTGGTATGTGTGAGTTGACGTTCAGATCTTACCAATCATTGTCGGTACATCAACGAATACACACCGGGGAACGTCCATATTCGTGCAATGTTTGTCTCAAGACGTTCCGCACCTATGCCACGTGTAGACAACACACACTGATACACTCGGAAGAAATGAAGTTCAAGTGTGAACAGTGTGATCGTAGCTTTAACAGACTGTACACGTTGAACGTGCATCGGCGCTCGCACTCCAACGAGCGACCGTTTGAGTGTCCGACGTGTGGGCGTGGATTCAAGCAGAAGCAGGACATGAAGAAGCACTTGCGACTGCACGCTGCCAAGGACAGCAGTCAGTTTGTGGAGGAGAAGTGGGACGTCGTGATAGAGGAGGAGTTGATTCAAGCCCCCAGCCTGTGTGACACCATCACCATTCCAGCCGACATGCAGGACCTGCAGTATGGCGGCTCCAATCTTTTGGCCACAAGCAACATCGTCATCACAGTGCCATACATGCATTCAACCACAGATGCTCAGGCCTTTTTCTCCATGTAA
Protein Sequence
LEQTFVLFMGAPINMKNPGKIQMHSSIDFHQLDPDACRREKWSEACRMVNLVNKDSMVCSDHFEPHHYPTATKCAELSSVDAVPSIPARSDNAVRFSKGEVIYPMIEDWGPPLCRLCAKPVLLMAETERTGVHIFGAEAQEMNLLQKINMYLPQPDSLPKFVCRLCVTRVDNTVATLLDFRLADKRLRDELGAKGSLKDLEAEGNHARRTHSPQGFKCHSCEHLFRDLPSLLLHELDHAKPPTQASALNKSQAVLPIPCSQCAQRFLSPQSLSLHLSSVHGQKSASDDAVFQCLDSRENKEFRFDLSHELCHVPSVESEDDRGNNEVEERPFSPPRTRQKSKLKSSQPSKKEVKTRTELTVGTELNLKNEPTDFAYIKVPTLETIQVSYECSDCSEVFTEIQTFKKHMKVHTAERKKQLCSHCNKYFTPAGLKTHQQRIRLNNEYICDLCKKVFKDRHYLVMHIKNTHNPNRLQCSKCTRTFKSKEGLQGHLMRHEGIYSFLCDICGISFLTQSAMRIHRRKHTQQNFFTCEYCGKKIQEHNRYQDHLRKHTGETPFGCERCERKFHSKKLLKQHMQIHNDVRPHQCPKCNMSFKRVGNLKQHLERHTTYRPICSICRASFSCCEERNAHRRTHTKEEREQAKIARSQPKGPKRNRNQYLCKACTTIFTTKEEKAEHLAQNPSHVNSIKCGMCELTFRSYQSLSVHQRIHTGERPYSCNVCLKTFRTYATCRQHTLIHSEEMKFKCEQCDRSFNRLYTLNVHRRSHSNERPFECPTCGRGFKQKQDMKKHLRLHAAKDSSQFVEEKWDVVIEEELIQAPSLCDTITIPADMQDLQYGGSNLLATSNIVITVPYMHSTTDAQAFFSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-