Edan010091.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ498131.1:87555-103780[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.4e-06 0.00057 20.2 0.9 1 23 37 59 37 59 0.96 2 13 0.00011 0.0074 16.7 1.0 3 23 64 85 63 85 0.96 3 13 0.00038 0.025 15.0 4.8 1 23 93 115 93 115 0.98 4 13 0.00024 0.016 15.6 0.3 2 23 121 142 120 142 0.95 5 13 0.013 0.88 10.2 2.5 5 23 151 169 148 169 0.93 6 13 0.0032 0.21 12.1 2.9 1 23 172 195 172 195 0.96 7 13 4.3e-05 0.0029 18.0 4.6 1 23 203 225 203 225 0.98 8 13 0.021 1.4 9.5 4.8 1 22 231 252 231 255 0.88 9 13 0.00039 0.026 15.0 7.3 1 23 269 292 269 292 0.97 10 13 0.0012 0.079 13.5 4.3 1 23 298 320 298 320 0.98 11 13 0.0091 0.62 10.7 0.4 1 19 326 344 326 349 0.92 12 13 1.2e-07 8e-06 26.0 5.4 1 23 355 377 355 377 0.98 13 13 0.00039 0.026 15.0 5.8 3 23 385 406 383 406 0.93
Sequence Information
- Coding Sequence
- ATGAGGAAAAAAGTTTGCAGTGGTGCTCACTTGCATTCTGATGTTCTCCCTGGTTACCAAGCTCACCCAAGCTACACAACTCCTCCAGTTAAgaaggaaattttaaatcatgtgtGCGTCAAGTGTAATAAGAGCTTTCCATACCCCAGAAACTTAGAGAAACATCTACTGGGCCACAAACGAAATGACTGTCAGCAGTGCACAGAAGTGTTTGCATCTCGTAAATCTCTCAAACTGCACATGCGAGAgaaacacaatgaaaaaataactgACCAATATAGTTGCAAATTTTGTGAAAAGGTTTTTACCAAAAGTTATTTACTATACAACCATTATCATGTACATGCCCAAGGACAATTAGTGTGTGAGAAATGTGGAGAATTCTTCTCCAATCAAAAAGAATATGATAGTCACATTGGGAAGCATGAAGCGAGTCGCATGTCCTGTATTCTGTGTCACCAGACATTTGCAAGACAACAGCAATATTCAATGCACATGCagAGTCATGAAAAGTACCAATGCCTGACATGCAAGAAGGGTTATCCTACAAAAAAGATGTTACTGCACCATAAACAGCAAGGACATAAAGTACAATTGCCTGCCTCATTCCAATGCTCCTTTTGCAACAGaacattttactataaaaatgctttaaataagCATCAGAAACAACATATGGGTGAAAAGACATTCAAATGCCATGTATGCAACAAGGATTTCCGGACAACAAGTTGCCAAGCTGCACACTTTTTGACAGAGACCCACCGTGCACTGGCTAGAAAGCAGGCTTCTGGTGACCAAGGATTCGTCTGTGAACACTGTGGTAAACATTTCATGCATCAGCGCTCCCTCAAACTTCACCGACTTCGCAATCATACAGTTCAGAAGACATTTTCCTGCAACTTTTGTTCACATTCTACTAATTTCAAAGCAAATTTAACGAGGCACATAAAATTGCATCTCAATGAGCGTAGTTATGTATGTGAACAGTGTGGGGCTGCATTTTATGTGCTGTCTGCTTTGAAAGATCATTGTTTGTACATCCACTCTGATATAAGGAAACACCGCTGTGACTTATGTTCAAAATCATTCAAACGGTCCAGTGAATTAAAAAGACATCAGCGAACACATTCCAACCTACGACCTTACGGATGCACCAGCTGCGAGAAGACATTCAATCGTAGCTCTCATTTAACACGGCACAGGGAACAGTGTCACAAGGATGAACAGGTGGGAAAGACTACTCGGCAGGTTCAGAGATTAAGGCAGGATAAGACAGGAACATTTCAGCCTGTTCCCAAAGAAAAGGTGAAATCCAGTAAACGCAAAGCGAGTGTAGGGAAAGCAAACAGCACACAGTTAGTAATGCTTCCTTATGAAGAAGTTGTATCATTTAAACACATTTCAGATGATGAAGCTTGCAGAGATCTTTCTACCTTAGGCCTAGAATGTTCTCAAGATTTAGCTACTGCTCCAGCAGCTCATTTCTTAGTCACATTACCAACACAACCTTTGCCATCCTCAGATTCAAACTTAATTTACATTACTACAACATCAATTCAGTCGACTATTTCTGCCACACATCAACAGCCAGAAATTTCCAAGCCTGCCTTACAATTTAGAGAGACAGACTCTATTGAACTGCTAAAACGTGATCACTATCAAAATGTGTCTGACACAAATTCGCACATGCTATTAGCCCCACATGAAGCTTCGGTACGAAATGTTCTTGGAGCTGACGTCAAATTGTCTGATTCAATGATGGAAGACATGGTGGAACCACAACAACCCTCGCCTGGTCGAGATTCCCCCCTCTGCATGTCGGATCTAGTTAGACTTCAAGAATCTGCTCTTCATGATTTTAGGACCCAACTCTGA
- Protein Sequence
- MRKKVCSGAHLHSDVLPGYQAHPSYTTPPVKKEILNHVCVKCNKSFPYPRNLEKHLLGHKRNDCQQCTEVFASRKSLKLHMREKHNEKITDQYSCKFCEKVFTKSYLLYNHYHVHAQGQLVCEKCGEFFSNQKEYDSHIGKHEASRMSCILCHQTFARQQQYSMHMQSHEKYQCLTCKKGYPTKKMLLHHKQQGHKVQLPASFQCSFCNRTFYYKNALNKHQKQHMGEKTFKCHVCNKDFRTTSCQAAHFLTETHRALARKQASGDQGFVCEHCGKHFMHQRSLKLHRLRNHTVQKTFSCNFCSHSTNFKANLTRHIKLHLNERSYVCEQCGAAFYVLSALKDHCLYIHSDIRKHRCDLCSKSFKRSSELKRHQRTHSNLRPYGCTSCEKTFNRSSHLTRHREQCHKDEQVGKTTRQVQRLRQDKTGTFQPVPKEKVKSSKRKASVGKANSTQLVMLPYEEVVSFKHISDDEACRDLSTLGLECSQDLATAPAAHFLVTLPTQPLPSSDSNLIYITTTSIQSTISATHQQPEISKPALQFRETDSIELLKRDHYQNVSDTNSHMLLAPHEASVRNVLGADVKLSDSMMEDMVEPQQPSPGRDSPLCMSDLVRLQESALHDFRTQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -