Edan013734.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ498146.1:22955-25857[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.065 4.4 8.0 0.3 1 21 145 165 145 166 0.95 2 17 2.9 2e+02 2.8 6.4 1 23 168 191 168 191 0.96 3 17 5e-06 0.00034 20.9 0.6 1 23 197 220 197 220 0.97 4 17 4.5 3.1e+02 2.2 1.9 3 21 224 242 222 243 0.89 5 17 0.0036 0.25 11.9 2.0 1 23 272 294 272 294 0.93 6 17 9.6e-05 0.0065 16.9 3.5 1 23 303 325 303 325 0.98 7 17 2e-05 0.0014 19.0 0.1 2 23 331 352 330 352 0.97 8 17 0.0087 0.59 10.7 3.6 1 23 358 381 358 381 0.97 9 17 0.11 7.7 7.2 1.1 1 19 387 405 387 409 0.87 10 17 8.9e-05 0.006 17.0 2.7 1 23 427 449 427 449 0.98 11 17 9.6e-05 0.0065 16.9 1.9 2 23 459 480 458 480 0.96 12 17 0.0033 0.22 12.0 0.9 1 20 498 517 498 520 0.95 13 17 0.0046 0.31 11.6 2.8 1 23 526 548 526 548 0.98 14 17 5.2e-05 0.0035 17.7 2.2 1 23 554 576 554 576 0.98 15 17 4.2e-08 2.9e-06 27.4 1.2 1 23 582 604 582 604 0.99 16 17 0.00046 0.031 14.7 1.4 1 23 610 632 610 632 0.98 17 17 0.00029 0.02 15.3 0.3 1 23 636 659 636 659 0.95
Sequence Information
- Coding Sequence
- TTTCAGTTTCAGGTCAACAAGACTGACAGATTACCTTTGAGGGTGTGTTTGACCTGCATCAAGAAACTGCACTTTTGCTATGAAAACATTAGAGATTTCACTGAGGCCAACCAAAAGTTAGTTCAGCTGCTAAAAGAAGAAGACGAAATGttgaAAAGAGGTCCTGAGCAACCCATCCCATTACTGTTGATTGAGAACAATGACAGCAATGCTGCTTCTcaaCCTGAGGAGCCTCAACGACTTCGGATCATTAACGAAAAGCTGGTCCAAGTGGACAAAAGTCTTCCCACGCCAGAACAGATAGCACAAGTGATTGAAACCATCAAAGCTGGGCTAGGAACTGATAGCAATGGCACACTTTcGACTCTGTTTCACACTTCTCCCAAGCAGTCACTGGAGAACCAACAAGAGCATCAGGATCCAAGCAAGACTTACAAGTGTTCTGTGTGCAGTGAACACCTGCCTGATTATTTCACCCTGATTCAGCACCAACTGCTCAAATTCCAGTGTCGAACGTGCAGGTCTCGCTTCTGTAGCTACAAGAGTCGGCGTGCACACTATCGAGACCTTCACCTAGGCAGTGCCAAATTCATGTGTCCCAAATGTGGACTTGGCTTTGTCACAAAGAACGAGTTGCGTAGCCACAAGAGAAAGGTCCACCCACTGTTTTGTGAGTGTTGTAGAAAAAACTTCATCTCGAAACTGGCTCTGTCTGCCCACGTCAAGCACAAAATGAAAAGCAACAAATTCGTCTGCAAGAAGTGTGGTCCCAACTGCAAAATCCAGTCCCACTCTCTGAGAGACAAAGAGAGCTTCAGTTGTGAAGAATGCGACTTGAAATTTGAGTCTAGAACCAAACTGAATGTGCACAATGAGCATCATGTTGAGGGCTATGGCCAGTCGAGGTATGAGTGCAAATACTGTGCTAAACGGTTCAATGTGAAGAACAAGCTGAGCAGACACATGAAGTTCCACATGGAGAAGCAGATCCAGTGCCCCATCTGCCCGAGAAAATTCACCATCAGCACGGAACTGAAGTACCACATGGAGGTGCATGCCAATGAGAGGAAGTTTGAGTGTGACTTGTGTCAAGCCAAGTTCCTACACAAAGTGCATCTGATCAAGCACATCAGAAACAAACATCTGCAGCAAAACTACTTTCTCTGCCAGATCTGTGAAGCCAAGTTTGACACAAAATCTGAGGTGGAGTCTCACTGTGCCAGTCACACCATAAACTCCAAAGTGAACCACCTGACGCTGTACCAAATCATCACACCGTTCCAGTGTGCCCTCTGCAGCAAGTTCTACTCCACCAAGTACAGTCTGGACAAGCACCTGCAGCGCCACAAGGACAAGGAGTTGGGCCTCTACTTGATGTGTGAGTTCTGTGGGCAGCATTTCGCCTCCAAGAGCCGGCTGCAGTCTCACCTCAGAGAGCACACCAACTCCACGCAAGTCAAGCCCAAACCAAGCCCAGCAGCCTTGAAACGCTATGTCTGTCAGGTCTGCAGTCAGAGGTACTCCACGACTGTGCAGTTGCTGGCACACATGGCGTGCCACACCGGCATCAAACCTTTCAAATGCTCCTTCTGTGAAGCCACCTTCACCACCAAAATGAACAAGAACAACCACGAGTTGAAACACAAGGGTATCAAGAACTACATTTGTCAGTACTGTCAAAAAGCCTTTTATGCTCATTACAATCTGGTTCTACACTTGAGAACGCACACCAAAGAAAAGCCTTACAAATGCACGTTTTGCCCGAAAGCTTTCCCTCGCCGCTCCAACTTGACGACACACCTGAGGGTGCACACGGGAGATCGCCCCTATGTGTGCAACGTCTGTGATCACGCTTTCAGCCAGAAGACCTCGAGGGACAAGCACTTGCTGATCCACACCCAGCAGTACCGGTGTGAGCAGTGCGAGGTGTCCTTCGGCAGGAAAAAGGAACTGACGGACCATGTCAGCAATGTCCACAGCATCTCAAACATGGAAGAAGATATGTTAATCATGCCCAAGGACAGTGTGATTCTAAGTCAGGATGAAACTGATGAGCACATGGAGGAAGCAAAGTTCCAGATTCAAATAATTGAGCAAGAAGTCATAACGTATGATGAACCAACTGCATTTTAG
- Protein Sequence
- FQFQVNKTDRLPLRVCLTCIKKLHFCYENIRDFTEANQKLVQLLKEEDEMLKRGPEQPIPLLLIENNDSNAASQPEEPQRLRIINEKLVQVDKSLPTPEQIAQVIETIKAGLGTDSNGTLSTLFHTSPKQSLENQQEHQDPSKTYKCSVCSEHLPDYFTLIQHQLLKFQCRTCRSRFCSYKSRRAHYRDLHLGSAKFMCPKCGLGFVTKNELRSHKRKVHPLFCECCRKNFISKLALSAHVKHKMKSNKFVCKKCGPNCKIQSHSLRDKESFSCEECDLKFESRTKLNVHNEHHVEGYGQSRYECKYCAKRFNVKNKLSRHMKFHMEKQIQCPICPRKFTISTELKYHMEVHANERKFECDLCQAKFLHKVHLIKHIRNKHLQQNYFLCQICEAKFDTKSEVESHCASHTINSKVNHLTLYQIITPFQCALCSKFYSTKYSLDKHLQRHKDKELGLYLMCEFCGQHFASKSRLQSHLREHTNSTQVKPKPSPAALKRYVCQVCSQRYSTTVQLLAHMACHTGIKPFKCSFCEATFTTKMNKNNHELKHKGIKNYICQYCQKAFYAHYNLVLHLRTHTKEKPYKCTFCPKAFPRRSNLTTHLRVHTGDRPYVCNVCDHAFSQKTSRDKHLLIHTQQYRCEQCEVSFGRKKELTDHVSNVHSISNMEEDMLIMPKDSVILSQDETDEHMEEAKFQIQIIEQEVITYDEPTAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -