Edan016753.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ephemera danica
Gene Symbol
-
Assembly
GCA_000507165.2
Location
KZ498143.1:51556-66101[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.027 1.8 9.2 0.0 2 23 8 29 8 29 0.97
2 14 0.005 0.34 11.5 3.4 2 23 484 506 484 506 0.97
3 14 0.00088 0.06 13.8 1.9 1 23 511 533 511 533 0.98
4 14 9.4e-06 0.00063 20.1 0.7 2 23 536 557 535 557 0.96
5 14 7.1e-06 0.00048 20.4 0.7 1 23 563 585 563 585 0.97
6 14 1.5e-06 0.0001 22.6 1.9 1 23 591 614 591 614 0.94
7 14 0.0079 0.53 10.9 2.7 3 23 626 646 624 646 0.96
8 14 7.1e-07 4.8e-05 23.6 3.0 2 23 652 674 652 674 0.97
9 14 0.063 4.2 8.0 0.4 2 23 691 711 690 711 0.93
10 14 4.8e-05 0.0032 17.8 1.0 1 20 717 736 717 739 0.92
11 14 0.0093 0.63 10.6 4.1 2 23 748 769 747 769 0.97
12 14 0.00012 0.0081 16.6 4.3 1 23 775 797 775 797 0.98
13 14 2.8e-07 1.9e-05 24.8 3.0 1 23 803 825 803 825 0.99
14 14 0.0038 0.25 11.9 5.7 3 23 833 853 831 854 0.94

Sequence Information

Coding Sequence
ATGGAACAATCTGCAGACCCCGTGTGTCCTGTTTGCACTTTGACAGTGCGACGTGAAATTCCGCTTGAGGATCATTTAAATACTCATCCCAAAGATCAAGTAATTCGAGCTTTAATATCCAAATGTTCGAGTACACCGAGTttgccaccaccaccaccattgACTCCTGCACCAACAACGTTTCAATACATTCAATCACCCGCCACCAATAATGTCGCCATTCAGTACCCTTTCAATTTGATCCCTATCGTTCCTTTTCCTTTTGGGGTTCCAACTCAAACTCCGTTCTTACCGCAAACCATATTTTCGCCACAAAATCAAACACCTAGACTAACAGGGACCAGTACAACCgtaaatgttacaaatttatcGATCGCCAGCACCCACACTGGAACAACCACTGCTCAATTACCGATCTCAAACAGCACCAGTGTAACGACAGCTAGCAATGTCGAGGTACGCTCGACGACCCCTGCCCACCCTGTGGCATCGTCCTCTACAGGCACGGTTGCCATCACAGAGGTCATGGAGATCCACCAGGAGAGTCGTGGGGGCTCAGAACATGTATCCATCGTCCCTGAGGTCCTGGATGAAGAGCTGGAGGAAGACATTGATGAGCAAGGAGGACATTTGAGCAGTCACGAACTTAGCAGCCATGAACTCAGTAACCACGAGCTCAGCAACCATGAGCTCAGCAACCACGAGTTGAGCAGCCACGAGTTGAGCAGCCATGAACTGAGCAGCCACGAACTTGACGATGCTGAGGAGCCGGATGATGAGGAGGAAGGTCGGATGAACCAACTGCTGCTGAGTCTGGAGCAGCGCAGCCTGGCGCCAGAGCAAGAGGTTGACGACGGAGCCAAGGACTTTCTGCCCAGTCCATGCGCCAGCTCGGAGCACAAGAAGGAGGAACTAGATGATGAGTTGGATGACCATCTCTCCCTGCAGCAGTATTCACCCAAGGACACGGTGTCGATGCGAGATATCCAGACGGATGAGACCATGCCGGCCCAGGGTGAGCTGAGTGAACAGGAGAGTCTAGGAGCTGACACTGCCTCCCTCTGGGGTCCTGCTGCCGAAGATGTGTTCTCTGAGCTTGCCAGCCATGGCCACACCCCCAGTGGGGGACACTTGCTGTCGGAGTGGCCTCCCTTACTTGGTCCAGACATCGCTGAGCCTCACAGTTCCAGGGATGCTGCGGCCTCCTCCAGTGCCTCGTCATCTTCTGCCAGCATGCACAGCGGTGGCAGCAGTGTGGGGCTGCTTCACGAGGTGTTCGGTGAGTCTGAGGTGAAGCTCGAGGTCAAGGCCGAGCAGTGGGTCAAGCTGGAGAGCCACGACGTCAAGCAGGAGACCATCGCTTGTCTCGCACAAGAGCCGGAGAAAGTTCTGATTGGTCTGGGAGAGGAGTCGCTGCTGGTTCAACAGTCGGACAATCGTCGTCAGCGGCAGTGCCACGCTTGCCACGAGAGCTTCCCCACGCTCCGAGAGCTCAAACTTCACCGGCAGAAGGTGCACCGTCGCACCACCTACGTGTGCACCATCTGCACCCTCGAGTTCTCGGACCGTGCAGAGTTCCACAGCCACAACAAAACTCACCCTCTCGAGTGTCTACAGTGCGGCAAGACTTTCACAAAGCGGCCAGGACTCACGCTACACATGAAACGTCATCTCGGGGTGAAACCGTACAAGTGCACCGTGTGTGACAAGAGTTTCATCACGAACCAGAAGTTGATCGAGCACACTAACGGTCACACAGGCAACAAACCACACCCTTGTGAAATGTGCGGTAAAGCGTTCAAACGTCACAGCAACTTGATTCAACACCGTAACTGGGTGCATAAGAAGGTTAGGAAAGCTAAGCAGGACATGATCTGTTTCTTCTGTACCCGTATCTTCCATACGAAGAAGAGTCTCACGTGGCATGTGGAAACCCACTTAGGCAAGCCCAACGTGTGTCCGCACTGTCCGCAACGATTCGTCCACAATTCCAGCCTCACTAGGCACATTCGGACAATGCACGACCGCAAGTACGTACCGGCAATCAACGTAAAGGCATCTACGTATGTAGAGTGTGCCGAATGTGGCGGGATGTTCTGTAAGACGTCCCTAGCGGCTCATATGAGGACCCACAACGGTGACCGCCCATTCTCGTGCAACATCTGCTTCAAAGCCTTTGCTACCAAGTGGAACTTGCAACAACACCGTTGGACACACGAAGGACCGACGAACAGGCCGTTGAGGTGCAAATTGTGCCGCAAGTCATACTTCAGAAAGGAAGACCTTGAGTGCCACATCAGATCGCACAAGAACCAGAGACCGTTCACGTGTGACTTCTGCGGCCAGAAGTTTGCCCGCAAGTACAACTGCATCCGGCACATGCGTGAGCACGTCAACGTCAAGAAGTATGAGTGCAACGAGTGTCCCAAGACTTTCCACAGGAGTTATTACCTGAAGGAGCACATGCGAGTGCACACAGGACTGAAACCCTGGGCGTGCCACATCTGCGGCAAAGGCTCCACTACCAAGTCCAACCACAACAAACACGTGAAAACTCATCACGCCAGAGAGTCGGTCACCCCAGAGGGTTAA
Protein Sequence
MEQSADPVCPVCTLTVRREIPLEDHLNTHPKDQVIRALISKCSSTPSLPPPPPLTPAPTTFQYIQSPATNNVAIQYPFNLIPIVPFPFGVPTQTPFLPQTIFSPQNQTPRLTGTSTTVNVTNLSIASTHTGTTTAQLPISNSTSVTTASNVEVRSTTPAHPVASSSTGTVAITEVMEIHQESRGGSEHVSIVPEVLDEELEEDIDEQGGHLSSHELSSHELSNHELSNHELSNHELSSHELSSHELSSHELDDAEEPDDEEEGRMNQLLLSLEQRSLAPEQEVDDGAKDFLPSPCASSEHKKEELDDELDDHLSLQQYSPKDTVSMRDIQTDETMPAQGELSEQESLGADTASLWGPAAEDVFSELASHGHTPSGGHLLSEWPPLLGPDIAEPHSSRDAAASSSASSSSASMHSGGSSVGLLHEVFGESEVKLEVKAEQWVKLESHDVKQETIACLAQEPEKVLIGLGEESLLVQQSDNRRQRQCHACHESFPTLRELKLHRQKVHRRTTYVCTICTLEFSDRAEFHSHNKTHPLECLQCGKTFTKRPGLTLHMKRHLGVKPYKCTVCDKSFITNQKLIEHTNGHTGNKPHPCEMCGKAFKRHSNLIQHRNWVHKKVRKAKQDMICFFCTRIFHTKKSLTWHVETHLGKPNVCPHCPQRFVHNSSLTRHIRTMHDRKYVPAINVKASTYVECAECGGMFCKTSLAAHMRTHNGDRPFSCNICFKAFATKWNLQQHRWTHEGPTNRPLRCKLCRKSYFRKEDLECHIRSHKNQRPFTCDFCGQKFARKYNCIRHMREHVNVKKYECNECPKTFHRSYYLKEHMRVHTGLKPWACHICGKGSTTKSNHNKHVKTHHARESVTPEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-