Edan009786.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- AYNC02017620.1:1136-4926[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0035 0.24 12.0 0.1 1 23 244 267 244 267 0.97 2 18 0.00072 0.048 14.1 1.3 1 23 273 295 273 295 0.98 3 18 9.1e-06 0.00062 20.1 2.4 1 23 301 324 301 324 0.97 4 18 0.0061 0.41 11.2 0.4 5 23 336 354 332 354 0.91 5 18 9.5e-06 0.00064 20.0 2.9 1 20 363 382 363 384 0.95 6 18 0.027 1.8 9.2 2.8 1 23 391 413 391 413 0.98 7 18 0.00053 0.036 14.5 4.4 1 23 419 441 419 441 0.98 8 18 0.00012 0.0082 16.6 0.7 1 23 447 469 447 469 0.99 9 18 0.92 62 4.4 0.0 1 19 475 493 475 493 0.89 10 18 0.013 0.87 10.2 0.6 1 23 541 564 541 564 0.95 11 18 0.0005 0.033 14.6 0.7 1 23 570 592 570 592 0.98 12 18 3.4e-05 0.0023 18.3 0.7 1 23 598 621 598 621 0.96 13 18 0.069 4.6 7.9 9.1 1 21 629 649 629 651 0.94 14 18 0.00014 0.0098 16.3 0.7 1 20 659 678 659 680 0.94 15 18 0.00032 0.022 15.2 2.7 1 23 688 710 688 710 0.99 16 18 0.0047 0.31 11.6 0.6 1 23 716 738 716 738 0.97 17 18 0.14 9.3 6.9 3.2 1 23 744 766 744 766 0.98 18 18 2.3 1.6e+02 3.1 0.0 1 15 772 786 772 790 0.82
Sequence Information
- Coding Sequence
- atggtgCAGGGGGGTGGATTGATGATGAGGCAGATTTCAAATGAAGATGATGGTTGTGACATAACTGTCAAAGTAGAAAGTGTTGTCGAAGACGATTCAGGAGATCAGACTGTTTTTCTCAATGTCAAGGCACAAAGTCAAATAGAGCAGCACTTAGCCACTGCAATGGTTCCTCATTTGAAGCTTTTGTTCATGGGACAAGTTTGGATTGGCCTGGGTGGTGAAGTGAAAGTTGAGCCCCCTGAGTACACAGTTGAGACTCAAGGGTTGAGTGGTCAGCACGAGGATACTAAAGCACTTATCAGTGAAAGTCAATTTGTCACTTATACTGACGACACAAACTGTGATGCCCCTCTCGATATGTCAGTAGGACCTTCCCATAGTTTGGATTCTTTACTCAAAGCATCTCCATTTCTCAACCCTCTCTCTGTATTTGACATGAATATCAAAATTCTAAAGCAGAATTTAGGGTCGAATTTTACTGGCGTTCACCTCGATACACCTACGTTGGGCAGCGTTCGGTTAGGAAATTACGAGATTGAAGGAGTGTCCAGTCGCACTGAAACGATGTATGAACAAAGTTATGATGATATAGGAATGCTGGCAATGAAGGCTAATGTAGTTAAACCAACGAGAACTAAAAGGAGAAAGAACAACAATCCTTGTCCTGATAACGGTATCAACTGCCATCCGTCCTGTGTCCGGTGTAAAGTACCTCCCCCCAAAATGTACAGCTGTGCCGAATGTGGTGGCAACTTCCGAAACTTGCAAGTACTCCGAAGTCACCAGATCAGGGTTCACGATCACCCCACTCCGTACATATGCTCGTATTGCGGGAAGAAGTGTGTCACATCACAGATACTGAAGGCTCACGAAAGGATTCATGTGAATGCACGTCCTTTCCAGTGCCCCAAATGTGATGCCAAGTTCTCTCAGAATTGCAACCTAAAGCTTCATATCATTAAGAACCATGAAGGTTCGGTTGAAAAGAAATTTCTCTGCATCGTATGCAGCAGAGGGTTTGAAACCAACAGTCAGTTGTCGGTCCACCTTAAGCAGCACAGGCCCACCATTATCACCAAACGTTTTCCATGCACTCACTGCAACCATAGTTTCAGAAGAAGGTCTGAACTGAAAAAACACTTAGATCTTGTAACCAAGAATCAAGATTATATCTGCGATTTTTGTGGAAATACTTACcatgcaaaacataatttgatttatcatgtaaaaattcatttaaacatCAGACCTCATAAGTGTAACCTTTGCCCCAAAAGTTATTTTGAGAAAAAGACACTAAGGGAACACATGTTCACACACACTGGAGAAAAGCCATTCAAGTGTCGTTTGTGTGATGCTCGTGTCAGCGCAGCTTCCTCCCTAAGGAGACACATGAAGAAGCATGACAATGCTCCAATTTATGCATGCCCCACGTGCGGTGTTGGCTTGCGATCGAAGGCACAAGTTGCCCTACATTGTTCCTCCAACACAAACACCAATAAGAAAGTGCCAATGCCAGCAAAAGTCAAGCCAACTAAAAATGTCGGGGAGAAAAGGAAAAGGAGGGCCCCCGGTGAACCCAAACCAAAATACAAACGGAAACCACCCACAAAAATGTACCATTGTGAGGAGTGTGGGGGTAACTTCCGGAACTGGTCGATATTCCGAGGTCACCAGATCAGAGTGCACGATCACAACACTCGCTACGTATGCTCGTTCTGCGGCAAGAAGTGTGCCGCCTCGACTGCTTTGAAAGCTCACGAATTGACACACACGAAGGACTATAACTTTCCTTGCGACAAGTGTGATGCCAAGTTCACAACTAAATTCACATTGCAGCTGCATATCATCAAGGAGCACGAGAAAAACATAGAGGAGAAGTACTGCTGTGTGGTGTGCAAGCAAACGTATAAACACAAGTACCTGTTGCAACGACACTTGAAATGCCACAGACCCACCATCCTCAAGAGTTACCCCTGTTCACACTGCAACCGTGTGTACTTCTCCAAACCTCAGCTTAAGAAACACTTGGAAATCTTAACAGGGACagtgaaaaaatacaaatgcgACTTCTGTGAGAAAGAGTACCGCCAAAAGCATGAAGTGGGCAAGCACATAATGACTCATCTGAATCTCCGCCCATTCATGTGTGATCAGTGCCCCAAGAGGTTCCTCACCAATGATGTCCTCATGAAACACAAGCTCATACACACTGGAGAGAAACCCTACAAGTGTCGTTTGTGTGACAATAGTTTCAATGCGTTTTGTATCCTGCTGAGACACATGAGAATGCATAACAATGCACCCGTGTATGCTTGTTCCACTTGTGGAGAAGGGGTGAGAAGCAAGAGGGAAATTGATATGCATTGTTTAAAGAACAGAgtttaa
- Protein Sequence
- MVQGGGLMMRQISNEDDGCDITVKVESVVEDDSGDQTVFLNVKAQSQIEQHLATAMVPHLKLLFMGQVWIGLGGEVKVEPPEYTVETQGLSGQHEDTKALISESQFVTYTDDTNCDAPLDMSVGPSHSLDSLLKASPFLNPLSVFDMNIKILKQNLGSNFTGVHLDTPTLGSVRLGNYEIEGVSSRTETMYEQSYDDIGMLAMKANVVKPTRTKRRKNNNPCPDNGINCHPSCVRCKVPPPKMYSCAECGGNFRNLQVLRSHQIRVHDHPTPYICSYCGKKCVTSQILKAHERIHVNARPFQCPKCDAKFSQNCNLKLHIIKNHEGSVEKKFLCIVCSRGFETNSQLSVHLKQHRPTIITKRFPCTHCNHSFRRRSELKKHLDLVTKNQDYICDFCGNTYHAKHNLIYHVKIHLNIRPHKCNLCPKSYFEKKTLREHMFTHTGEKPFKCRLCDARVSAASSLRRHMKKHDNAPIYACPTCGVGLRSKAQVALHCSSNTNTNKKVPMPAKVKPTKNVGEKRKRRAPGEPKPKYKRKPPTKMYHCEECGGNFRNWSIFRGHQIRVHDHNTRYVCSFCGKKCAASTALKAHELTHTKDYNFPCDKCDAKFTTKFTLQLHIIKEHEKNIEEKYCCVVCKQTYKHKYLLQRHLKCHRPTILKSYPCSHCNRVYFSKPQLKKHLEILTGTVKKYKCDFCEKEYRQKHEVGKHIMTHLNLRPFMCDQCPKRFLTNDVLMKHKLIHTGEKPYKCRLCDNSFNAFCILLRHMRMHNNAPVYACSTCGEGVRSKREIDMHCLKNRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -