Edan013890.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- zfy1
- Assembly
- GCA_000507165.2
- Location
- KZ497846.1:197590-200126[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.6e-05 0.0011 19.3 1.1 1 23 128 150 128 150 0.98 2 16 0.001 0.067 13.7 0.9 1 23 227 249 227 249 0.98 3 16 0.00082 0.055 13.9 0.6 2 23 256 277 255 277 0.94 4 16 0.0024 0.16 12.5 1.4 1 23 287 310 287 310 0.92 5 16 0.0016 0.11 13.1 0.1 2 23 360 381 359 381 0.95 6 16 3.6e-06 0.00025 21.3 3.5 1 23 391 414 391 414 0.97 7 16 3.4 2.3e+02 2.5 0.2 1 23 443 466 443 466 0.93 8 16 0.02 1.4 9.6 1.1 2 23 473 494 472 494 0.96 9 16 0.00082 0.055 13.9 2.8 1 23 504 526 504 527 0.95 10 16 0.03 2 9.0 7.7 1 23 559 581 559 581 0.92 11 16 6.3e-05 0.0042 17.5 0.5 2 23 585 607 585 607 0.96 12 16 0.00049 0.033 14.7 0.0 2 23 618 639 617 639 0.95 13 16 5.1e-05 0.0034 17.7 1.2 1 23 645 667 645 667 0.98 14 16 5.3e-06 0.00036 20.8 0.7 1 23 673 695 673 695 0.98 15 16 4.6e-05 0.0031 17.9 1.9 1 23 701 724 701 724 0.96 16 16 0.011 0.73 10.4 3.6 3 22 732 751 730 751 0.89
Sequence Information
- Coding Sequence
- ATGGCTCAAACAGGATCTTTGGCCATGGAAATAGAAGAGGATATGACTGATAATGTGGTCGATTTATCAGGATTGTGTCGAATGTGTGCTTGTACGTGTCCAGAGACGAATGATACCTCTTTACAACTTGCGTTTGAATCAACGTTAACTGAGAAATTACGCGAGTATCTCAACATTAAGGTCGAAGAGGACCAGGATTATTTACCACGACAAATTTGTCACCAATGTTACGACGCGTTGAATCAATGGTCTGCAATTCGAGAAACTGTGAAACGTTCTGAAGACTTTTATCATCGTCAAGTTGAGTTACGTAATTTAGATTTTGATCCAAAATTTGAACCAACTTCAGTAGGTAGCAATCAGAACGATGAAATGCCACAATTTGAATGTACCATTTGCCATGAAATGTTCTCAAATGCTGAGTATTTATCCATGCATCAATTGTCACATAATCTCTGTGCCCCCACCACACCAAAACGTACTCGATACCAGTCGAAATCTAACAAGTACGATTTCAGTGATTTTACTTTGGTTAAAAAAGAAGTTACGATCACTCGCGTTGGTTCAAAATCTAAAGATTCAACTCAAAATAGGGAGAGTATAATTTTACCTACCCCTTCTGCTAGTATTGTAGTCACACCTATAATTGATGAGTTGGAGAAAATCGATAACATCAATTACCCGTGTGGTAAATGTCAACTCACTTTTGAATCTTTCGATTCATTCGTTCAACACACTCAAACTCACAGCTACTTACGAGAACTTCCATGTGGAATATGCGGTTGTTATTTCCGTAACAAACAATTATTGATGCAACACGTTCTAGAACATCGAACCAACCCTGATAAACAGGTAGCGTTCACCTGTGATTTATGCAACAATGTATACAGTTcacgtaaaaatttattggctCATTTCTCGTACCGGCATACACCGTCAAAAAAGAAAACTCTCAAAATAGATGAACCGGATACAAAATTGGATATTTATGTTTGCGGGACATGTAAGGATAGTTTCAAAGGAATTACTGAATTTGCAGAACATTTCCCGAAAAAGCACGTAATATTTTACGAACTTTCTTGCGGTGTCTGTGACGCTAGATTCAAACGATTGCCGAATTTACTAGTCCACGAGCAAAATCATAAAGACAACCCCGATGTTGACATATCGTTCCGTTGTAGCCAGTGTGATAAAGTTTTTAGTGAGCAACGTAACTTGACACATCACATACAAAACAAACACCCAAAAGAAAAACCAACTAAAACTCGCAGTAAAAATTACGTTGAGTTACCAGAAGATGAATTGAATAGTACGTCAACTGGTAGTTACTCTTGCGGGGCTTGTAAAGTTGTTTATCCCAATCTTTTAGACTTCTCTCAACATTTCGAAAGAGTGCATCCCATGTTCAATCAGTTACCGTGTGGAGTATGCGGCGTTCAGTTCAGAAAAGTTCACTGTCTCATACAGCACGAGCAAATGCATAAGAAATTGCCCGACGAACAGATCACCTTTTCGTGTGAATTTTGCGATAGAAAGTTCAGTGCCACACGGAATTTAAATCAGCATGTAGCCAAACATCATCCTGATCGAGAACTCTCTACTCATACAAGTGAATTTCAAGGTCCTTCCGACTATCAAACTTTGTCAGAGTTACAAGGTACTTCAAAAGATGGATTTACATGTAACGAATGTCACCAAATATTCTATAACCAAACTCAATTCAACAAACATTGTTTGAAACATGTTTTAAATCGTTGTCCGGTCTGTCAATTTGGTTTCGAACGTAAACGACAATTGACGATACACATGAAAGAGGTTCAtcctaattataaaaatgagggAAAAACTTTACCATGTCCTGTATGTGGTAAATTATTCAAAGCTGCCCAAACATTGAAAGTTCACATTGAATTACACTCGGCAGAACGGAATTATGTTTGTGAAATTTGCGCCAAAAGTTATCGCTCACTCTCGACCCTGTATAAACACAAACAATCGCACGCTGACAAACCAAAGTTTGAGTGTGAGATTTGTAACCGAACTTTTACATTCAAAGCAGCAATGAAAAAACACATAATGCTCCATGTCGACTATCTCCCGTTTAAATGCAACAAATGCGGACGTAGATTTACAGGCTTGGGCTTGTTGAAAAATCATAAGATTAAGAAACACGACACAGGGACTCCACATCATTGCATTAGGTGCAGGAAAGGTTTCAAAGATAGTCGGAATTGGAGACGCCATATGAGAACCGTGTGTCGAGTTCCATTAGAGGAAATTCCATAT
- Protein Sequence
- MAQTGSLAMEIEEDMTDNVVDLSGLCRMCACTCPETNDTSLQLAFESTLTEKLREYLNIKVEEDQDYLPRQICHQCYDALNQWSAIRETVKRSEDFYHRQVELRNLDFDPKFEPTSVGSNQNDEMPQFECTICHEMFSNAEYLSMHQLSHNLCAPTTPKRTRYQSKSNKYDFSDFTLVKKEVTITRVGSKSKDSTQNRESIILPTPSASIVVTPIIDELEKIDNINYPCGKCQLTFESFDSFVQHTQTHSYLRELPCGICGCYFRNKQLLMQHVLEHRTNPDKQVAFTCDLCNNVYSSRKNLLAHFSYRHTPSKKKTLKIDEPDTKLDIYVCGTCKDSFKGITEFAEHFPKKHVIFYELSCGVCDARFKRLPNLLVHEQNHKDNPDVDISFRCSQCDKVFSEQRNLTHHIQNKHPKEKPTKTRSKNYVELPEDELNSTSTGSYSCGACKVVYPNLLDFSQHFERVHPMFNQLPCGVCGVQFRKVHCLIQHEQMHKKLPDEQITFSCEFCDRKFSATRNLNQHVAKHHPDRELSTHTSEFQGPSDYQTLSELQGTSKDGFTCNECHQIFYNQTQFNKHCLKHVLNRCPVCQFGFERKRQLTIHMKEVHPNYKNEGKTLPCPVCGKLFKAAQTLKVHIELHSAERNYVCEICAKSYRSLSTLYKHKQSHADKPKFECEICNRTFTFKAAMKKHIMLHVDYLPFKCNKCGRRFTGLGLLKNHKIKKHDTGTPHHCIRCRKGFKDSRNWRRHMRTVCRVPLEEIPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -