Edan016129.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ501791.1:1266872-1282397[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.9e-05 0.0053 17.1 0.5 1 20 344 363 344 368 0.90 2 12 0.15 9.9 6.9 0.1 2 23 402 423 401 423 0.85 3 12 1.4 92 3.8 0.1 1 23 428 450 428 450 0.94 4 12 1.2e-06 7.8e-05 22.9 1.1 1 23 456 478 456 478 0.98 5 12 0.00023 0.015 15.7 1.1 1 23 484 506 484 506 0.98 6 12 1.2e-06 8.4e-05 22.8 0.0 1 23 528 550 528 550 0.98 7 12 0.00083 0.056 13.9 1.0 1 23 556 578 556 578 0.98 8 12 1.2e-05 0.00084 19.7 1.3 1 23 584 606 584 606 0.99 9 12 8.2e-05 0.0055 17.1 0.3 1 23 612 634 612 634 0.98 10 12 0.00012 0.0084 16.5 3.3 1 23 640 662 640 662 0.98 11 12 9.4e-07 6.4e-05 23.2 1.0 1 23 668 690 668 690 0.98 12 12 0.00072 0.048 14.1 1.0 2 23 696 718 695 718 0.93
Sequence Information
- Coding Sequence
- ATGGATACTGCTATTGAAGTTGAATTCAGAGAACTTTGCCGCATATGTGCAAATCCTCGAGGACAAGATGTTATGATACCAATATTTGAAAAAGATGGCATCAGAATTGGTTTGATGCAAAAAATCAACTCCTACCTTccaataattGTCTCTGAAGATGATGGGTATCCCAACAAAGTCTGCATATCTTGCACTTCTAAACTCAATGTTTGTGACCTTTTGTTTCAAACATGTACTGAAGCTGATGCAAGACTTAAAGCACTGAAGAAACAACTGGACATTGAAACTGAAAAGCTGAAATTtccaaaatcattgaaattaacTGATTATGACCAAGACACAACTGATTTCTCTCCTGATGCTGGCAAAACTACTTTATCACTCGAAGAAAACGATGAATCATCAACTAGCACAGATACCACAGCACCTTACACTCTGACTGCGTCTGCAGGGTCAAAATCTGTACAGTCAAATGTGGACTCCCAAGTATCAGTCATCCTCTCATCTGAGAAGCATACTGATGAAtctccAAGTGTGCCCAAGATGAATATAGTTGTGGTGAATGTGCCAAAAGATGTATCCAGTGACAAGGACAGAGCAGGAAGTCCTGATACTGCATCAAAAGAGAGTGATGATTTAGACATGGAGATGACCAATGACCTGCTAGATAACAACATAGATAACAGACAGTTAAGACAAGTAATTGCTGAGGCCGAGCTGATGCAGATGCAGGCAGCTGAAAACTTCTTGCGTGCCCTGGAAGAGAATCTGGATGAGCCACTCAACTCAAGGTCTGAGGTTACTGCATATCAGGAAGAAACCCCAGCCTATTCTAAACCACCAAAGACAACCCATAAACGTGAATTTAGCAAGATTTCCAGGCAATACAAAACTGGGAAAGTAGAGTCAAGATCATCCCATGGCACGACATCTAAAAGAACTGGCTCAGAGATTAGAAGGAGCCAGAGACGACgtatcaaaaacaaattttatgattCGGACACAGAAATAACCTCGAGCTCTTGTTCATTTGAGTGCAAACTATGTAGAAAAGTATTTACAAATGCTTCAGGTCTGAGGATCCATAACATTAAAAACTCTCACAGAATGCAAGTAGAGAGACTAGTGTGCTTATCATGTGACACAAAGTTTGACGATGTGAATGCTGCAGAAGAACACGACTGCAGTAGTGATAGTAAAGTTTCATGTAATGTCTGTGGGAATGTGTTTTCCACTTTGCAAGAAGCTgatctacataaattacaacaCTCAAATGGACCATTTACATGTGCAAACTGTGGTGATATTTTTGACAGTTTTGAAATACTACAGGATCATATCATTCAGCATACACGAGAAAAGCCATTCCAGTGTAATTATTGTGGCAAAATGTTCAAAAGTAAAATTGGTCTGCAAGGGCATCAGTTGAGACATACAAATTCTAGGACATACGTTTGTTATATATGTCACACACCTTTCTCAAATCGAGAGGAAATGCTCAGTCACAGAGCCACTCATTCAAAGGAGGAAAAAGATGTTGTGCAATCTCGAAAAGCAAAACAAACTTTAAGTATGAAAAGATTTCCTTGTGAAATTTGTGGGAAATCACTGACATCGAAAGCAGGTTTAATCGTTCACATTCGTATGCATAAAGGTGAAAAACCTTTCGAATGTGAACAGTGTGGACGTAGATTCTTACAGGctatcaaactgaaatatcaTCAACGACTTCATGTTGGAGACTTGCCATACGTGTGCTCTCTATGTGAGAAACGCTTTAATACTCAACGACAAATGGATACTCACATGCGTGTGCACACAAACGAAAGGCCctttatttgtgaaatttgtGGCATGAGATTTCGATCCAATGGAGTACTCGGAAGACACAAGAACACACACAGTGAAGAACCTCTTTATGCATGTTCTTTTTGTGGCAAACGTTTTCGTACTCGTCATGCTACAACAGTTCATGAAAGAACACACACAGGGGAGAGAAGATTCATGTGTGACATTTGTGGTCGTAGTTTTGTTCAGAAAAGTACACTGGACAAGCACAGGCTCAGGCACGAGAAAAGGAGAGTTGAATGTTTGGAATGCAACACCACGTTTGCATCAAGGAAAGGACTTCGTAGACACTTTGAAAAGAAGCACACTCCAGTTATTGTGGAATCTATTCAAATGCTGGATGCAAATACTGCAGAATTTGTGTCAGTGCCAATAGATGATTTGGTCGTTGAAGTGGTGGTGTAA
- Protein Sequence
- MDTAIEVEFRELCRICANPRGQDVMIPIFEKDGIRIGLMQKINSYLPIIVSEDDGYPNKVCISCTSKLNVCDLLFQTCTEADARLKALKKQLDIETEKLKFPKSLKLTDYDQDTTDFSPDAGKTTLSLEENDESSTSTDTTAPYTLTASAGSKSVQSNVDSQVSVILSSEKHTDESPSVPKMNIVVVNVPKDVSSDKDRAGSPDTASKESDDLDMEMTNDLLDNNIDNRQLRQVIAEAELMQMQAAENFLRALEENLDEPLNSRSEVTAYQEETPAYSKPPKTTHKREFSKISRQYKTGKVESRSSHGTTSKRTGSEIRRSQRRRIKNKFYDSDTEITSSSCSFECKLCRKVFTNASGLRIHNIKNSHRMQVERLVCLSCDTKFDDVNAAEEHDCSSDSKVSCNVCGNVFSTLQEADLHKLQHSNGPFTCANCGDIFDSFEILQDHIIQHTREKPFQCNYCGKMFKSKIGLQGHQLRHTNSRTYVCYICHTPFSNREEMLSHRATHSKEEKDVVQSRKAKQTLSMKRFPCEICGKSLTSKAGLIVHIRMHKGEKPFECEQCGRRFLQAIKLKYHQRLHVGDLPYVCSLCEKRFNTQRQMDTHMRVHTNERPFICEICGMRFRSNGVLGRHKNTHSEEPLYACSFCGKRFRTRHATTVHERTHTGERRFMCDICGRSFVQKSTLDKHRLRHEKRRVECLECNTTFASRKGLRRHFEKKHTPVIVESIQMLDANTAEFVSVPIDDLVVEVVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -