Edan010617.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ497629.1:628522-635436[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.087 5.9 7.6 3.4 1 23 239 262 239 262 0.97 2 22 0.00028 0.019 15.4 0.2 1 23 292 314 292 314 0.96 3 22 0.018 1.2 9.7 0.9 1 23 324 346 324 346 0.98 4 22 4.5e-05 0.0031 17.9 0.4 3 23 358 378 356 378 0.97 5 22 0.00064 0.043 14.3 1.0 1 23 384 407 384 407 0.93 6 22 0.0015 0.099 13.1 0.1 2 23 471 493 470 493 0.95 7 22 0.015 1 10.0 0.1 1 23 503 525 503 525 0.98 8 22 0.061 4.1 8.1 0.7 1 21 635 655 635 656 0.94 9 22 0.5 33 5.2 0.1 2 23 665 686 664 686 0.96 10 22 4.5e-06 0.00031 21.1 2.0 2 23 697 718 696 718 0.97 11 22 0.31 21 5.8 1.4 1 23 724 747 724 747 0.97 12 22 0.18 12 6.6 0.0 3 20 797 814 795 819 0.93 13 22 0.01 0.68 10.5 0.3 2 23 827 848 826 848 0.96 14 22 0.0045 0.3 11.6 6.5 1 23 858 880 858 880 0.98 15 22 0.00015 0.01 16.2 1.1 1 23 886 909 886 909 0.96 16 22 1.4 97 3.7 1.7 1 10 993 1002 993 1019 0.83 17 22 0.5 33 5.2 1.3 2 23 1023 1045 1022 1045 0.91 18 22 4.2e-05 0.0028 18.0 0.1 1 23 1051 1073 1051 1073 0.97 19 22 2.3e-05 0.0016 18.8 2.1 1 23 1079 1102 1079 1102 0.98 20 22 0.011 0.72 10.4 0.5 2 23 1109 1131 1108 1131 0.95 21 22 8.8e-06 0.00059 20.2 0.5 1 23 1139 1161 1139 1161 0.99 22 22 0.16 11 6.7 0.2 2 22 1168 1188 1167 1188 0.95
Sequence Information
- Coding Sequence
- atgaataaaaataaaactcccGGACGCGAACAACGGATCTACACCGAAGTGGAATGTCCAGTGGATATGGATCGATTGTGTCGTTTGTGTGCCGAGCCATGCACTACGGCTACATCCATCAGTTTACGGAAATGCAGTCAAGCTTTGGTGTCTCAGTTATTACTCTATTTTGGTGTTTTGATTGGAGAAAACGATGGTTTACCGACGAAACTGTGCATGTCGTGCAAGAAAGAACTGGATCGCTGGGAGGAAATCAAGGTGATGGTTCAACGAGGCCAAACATACCTGATGGAACAGTTGGCACTGATACGAGAACAGGAGCAGTCCGAGCAGCCGGAGGAGTTCCAGATGATCGACAGCGAGCCAGAATCCCCCCAGGAAATCCGcattgaagaaatttttgaggAGCCCAGGTACCCAGATGATGACGTGACTGTTTATGATGTTGATAATAGTCCAGCTAGTCCTtctaatgatgatgatgatgcttcTAATGATCAGGTTGCTTTTAATGATCAGGATGCTTCTAATGATCAGGATGCTTCTATTGATCAGGATGCTTCTAATGATCAGGATGCTTCTAATGATCAGGTTGCTTTTAATGATCAGGATGCTTCTAATGATCAGGATGCTTCTATTGATCAGGATGCTTCTATTGATCAGGATGCTTCTAATGAGCAGGATACTCCCATGTCAGAAGATCCCAATGAATATTACCATTGTAATATATGTTCCGCTACCATCCGTGGCAAAAGCAAGTTTCACattcatatgaaaattaatcatgcacataaaaatgcaaaactgAAAAAGGCTGAAACTCTTATGAACGTTTATAATCGGTTGAAAAGACCAGTTACACCAACCAATCCTTTCAAATGCGGACTATGTTCTagggaatttaaaaaaagtgctCAGTTGGAGGCTCATGTAGAAGAACATAGCGctacaaataaatttgttaaacgaTACCCATGTGCTCATTGcaacattttattcaaaaaagtCAAATTGTTGATCGAACATCTAAAGCAACATGTCAAAAATCCAACGAAAAATTTAGCAGTTATCTGTGAAATTTGTAACAAAGGTTTTTTAAGACGTGAAAATTTGACCAAACACATGCTTTCTCATAAAGATGAGTACAATTTTACTTGTGATGAATGtcctattaaatttaaatacaaaaatttattgaaagagCATGTTGGTAAATTTCATAGCGGTGTACCACCAACACCAATGAAAACAaggtttaaaaaagaaaaaaaagcaaaatatagCTCAAAAACTTCAGACGAAGAAACTTCTATCGATCCATGGGatttgaaacttgaaacttCTCTATCTAACAAACAACCAGATGACAGGAAAACCCAAGATTCTACAACTAATGAAATTGGTATAGGTAAATGTGGCCTATGTGATATGGCATTTATGACCATTTCTGACTTGACCAAACATTTACTGAACAGTCACAAACCAACTGCATCAGAATACTTAGTGTTTACCTGTGGAAATTGTAATGATATTTTTGATACAATGGATGAGTTGATAGCACATGTTCAAAAACACTCCAACCCTTCAGATTCAACAGTTTCAGACACTAGTGACATCAAATATAGCTGTAAATTCTGTGATCCACCCATTGAGTTGAACTCCTTGCTCGGTGTTGAGTTTCACATGCGTAGAAAACACCCTGACGTCAAGTACAAAAAAGAATTACAAAAAGTTGGAagcagtaataaaaaaacatatctaGAGATGATAAAGCAAGAAGATGATAAAAAGTCCATCTTTGTGTCTGAAGTGACGTACGATGACCATTCAGGCTCAGAGACTGAAAGCAGGGGGTTGGTTGTAAACCTTGTTGAAGATGCACCACTCGACATGACGAAACTTTTCCACTGTGACATTTGTGGTGAAGATTGTGAGGACCTGGACACATATCTGTCACACATGTCTCAAGAAATGGACCAGCGTTCCAGTGTACCGTGTGCCGTTTGTAACGTCAACTTCATGAAAGTGGAGAGTTTGTCGTTGCACGTTCAGAAACACGCCGATAACCCTTGTAAACACATACATGTGTCGTGTGAGTTTTGTGGCAAAAGGTTTGCCGATCAAGACAACTTGTCAACACACCACAAAACCCATTCAAACCATAAACGATACCAATGTTTTGCTTGTAACCttggttacaaatttaaaaatgcctTTGTTCGTCATTTCTCTACAGTACATACTGATTTCCAAGGTGAGGCCAATGATTTGTTAGTCGACATACCAGAAGCAATTGGAACTCAAGCAGATGGTATCACTGTGAATCCTGGCACTTGGGCTTACATTTTGAAATGtagagaaaaaatgaaaacagcGAGAAATTATGGTTGTGGTGTGTGTGGAGCAAAGTTTGAATTAGAAAGTGAATTTGAAAGTCACATGGTTGCTGAATTTCACAACTTAAAACGTAGAAATGTACCTTGTTACATATGTGGATCATCTTTTAGAAAAGTGGAACCATTGTTGAAACAcactaaaaaacacatttccaACCCTAATAAGAATATAAAccataaatgtaatatttgtgGAAAAATTTTCCATGCTCGAGTTTATTACAATCAACACATGCACACCCATTCAGGTCTGAAAAGATTTAAATGTAACCTGTGTGACATGCAGTTTAGTTTCAAGAGTGCTTGGAAGGATCACATGAACGGCAAACACCCTGATTATGATGGTGATGAAACAAGTGGCTTGACAATTGCTCCTCGGAAAGCTAACGACACCTATGGCAGTCAAATGTCATCTCAGAATCTACAAGTTATTCAAATCAATCCAGATGACTTAGACAATGATGTTACTGATGTCGatcaaataaacaaattaattgacatTGCCTTCGTGGATGAACTAGAGAAGACTAACCAGGAGGAAGTTACAGACGAGTTGAAAATACTGGAATCAGATCCACACTATAAATGTGACATTTgtaatgagaaatttttgagtagCAAACTTTCATTTGAACATACTCTAGAAAAACATGTGAATACAAATGAGCTTATTTGTCCATATTGTCAACAAGAACATGCTTCTAAAGATGAATTACACAATCATATCTTCTTGCAACATTCAAAAATCAGGAAATATTTCTGTCAAATCTGTGGTAAAGATTTTAAACAAGCAGCTGCTgtcaaaattcatttaaacGTCCATTCCTCCGTCAGGTCATTTCAATGTGAGCAATGTCCCTGTAGTTACAGGAATAATTCTGCATTGTGGCAGCATCGTAGGAGAGTGCATCTAAAGGATTTCAATGTGATGTGTGAGCTGTGTTCCAAATTGTTTCTGACTAAAGCTGAACTGAAGAAACACATGGCAAGTAGGCATCAGGGGGGAACACCCAAACCATACAAATGCAATGTTTGTAACGCTACATTCGATCTTCCCTCCAAGTTAAAGGTACACATGAATAGACATTCAGGCAATAAACCATTGCGGTGTGTCAAGTGTAGAGCTGGATTTGTGGACCTCAAGTATTGGAGACTCCACATGAGAAAAGTGTGCAATGTCCCTGAAAAAGATATCCCATATACAAGACCTAgatttgaaaattag
- Protein Sequence
- MNKNKTPGREQRIYTEVECPVDMDRLCRLCAEPCTTATSISLRKCSQALVSQLLLYFGVLIGENDGLPTKLCMSCKKELDRWEEIKVMVQRGQTYLMEQLALIREQEQSEQPEEFQMIDSEPESPQEIRIEEIFEEPRYPDDDVTVYDVDNSPASPSNDDDDASNDQVAFNDQDASNDQDASIDQDASNDQDASNDQVAFNDQDASNDQDASIDQDASIDQDASNEQDTPMSEDPNEYYHCNICSATIRGKSKFHIHMKINHAHKNAKLKKAETLMNVYNRLKRPVTPTNPFKCGLCSREFKKSAQLEAHVEEHSATNKFVKRYPCAHCNILFKKVKLLIEHLKQHVKNPTKNLAVICEICNKGFLRRENLTKHMLSHKDEYNFTCDECPIKFKYKNLLKEHVGKFHSGVPPTPMKTRFKKEKKAKYSSKTSDEETSIDPWDLKLETSLSNKQPDDRKTQDSTTNEIGIGKCGLCDMAFMTISDLTKHLLNSHKPTASEYLVFTCGNCNDIFDTMDELIAHVQKHSNPSDSTVSDTSDIKYSCKFCDPPIELNSLLGVEFHMRRKHPDVKYKKELQKVGSSNKKTYLEMIKQEDDKKSIFVSEVTYDDHSGSETESRGLVVNLVEDAPLDMTKLFHCDICGEDCEDLDTYLSHMSQEMDQRSSVPCAVCNVNFMKVESLSLHVQKHADNPCKHIHVSCEFCGKRFADQDNLSTHHKTHSNHKRYQCFACNLGYKFKNAFVRHFSTVHTDFQGEANDLLVDIPEAIGTQADGITVNPGTWAYILKCREKMKTARNYGCGVCGAKFELESEFESHMVAEFHNLKRRNVPCYICGSSFRKVEPLLKHTKKHISNPNKNINHKCNICGKIFHARVYYNQHMHTHSGLKRFKCNLCDMQFSFKSAWKDHMNGKHPDYDGDETSGLTIAPRKANDTYGSQMSSQNLQVIQINPDDLDNDVTDVDQINKLIDIAFVDELEKTNQEEVTDELKILESDPHYKCDICNEKFLSSKLSFEHTLEKHVNTNELICPYCQQEHASKDELHNHIFLQHSKIRKYFCQICGKDFKQAAAVKIHLNVHSSVRSFQCEQCPCSYRNNSALWQHRRRVHLKDFNVMCELCSKLFLTKAELKKHMASRHQGGTPKPYKCNVCNATFDLPSKLKVHMNRHSGNKPLRCVKCRAGFVDLKYWRLHMRKVCNVPEKDIPYTRPRFEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -