Edan016389.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- -
- Assembly
- GCA_000507165.2
- Location
- KZ497832.1:328080-333568[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0035 0.23 12.0 0.1 1 23 126 149 126 149 0.94 2 24 0.002 0.14 12.7 3.6 2 23 162 183 161 183 0.96 3 24 1.5e-07 1e-05 25.7 0.2 2 23 188 209 187 209 0.98 4 24 0.04 2.7 8.6 1.3 1 23 244 267 244 267 0.97 5 24 0.021 1.4 9.5 0.2 1 23 280 302 280 302 0.97 6 24 0.0032 0.22 12.1 0.1 2 23 304 325 304 325 0.94 7 24 0.17 12 6.6 1.4 1 23 414 437 414 437 0.95 8 24 0.015 0.99 10.0 2.5 1 23 458 480 458 480 0.98 9 24 0.17 11 6.7 4.3 1 19 486 504 486 509 0.92 10 24 0.047 3.1 8.4 1.2 2 20 556 574 555 578 0.89 11 24 0.015 1 10.0 2.0 1 23 596 618 596 618 0.98 12 24 0.84 57 4.5 1.4 1 20 624 648 624 650 0.87 13 24 9.1e-05 0.0061 16.9 0.2 1 23 679 702 679 702 0.93 14 24 0.042 2.8 8.6 5.8 1 23 743 766 743 766 0.96 15 24 0.024 1.6 9.3 4.0 1 23 777 800 777 800 0.96 16 24 0.55 37 5.1 3.4 1 23 806 829 806 830 0.93 17 24 3.9e-05 0.0026 18.1 0.4 1 23 879 901 879 901 0.99 18 24 0.0053 0.36 11.4 4.0 1 20 906 925 906 927 0.94 19 24 1.4e-05 0.00091 19.6 2.4 1 23 933 955 933 955 0.97 20 24 0.0017 0.12 12.9 0.1 3 20 961 978 959 979 0.94 21 24 0.00016 0.011 16.2 0.2 1 23 987 1009 987 1009 0.95 22 24 0.021 1.4 9.5 0.7 1 23 1014 1037 1014 1037 0.96 23 24 0.00015 0.01 16.2 1.0 1 23 1042 1064 1042 1064 0.97 24 24 0.00025 0.017 15.6 0.5 3 23 1072 1093 1070 1093 0.97
Sequence Information
- Coding Sequence
- ATGTTCGAGTGCGTTTTAGTACCTGGTGAATTGGAGAACCAGGGGGCATTGGCTGTGCAACCACTCACTGTCGAAGAGGATTTGCAGCCACCAGACTCGCCTCCTGAACTAGATGATGATGTTGCAATCAAGGAAGAGCCACCGGATCCGATTGTCAACGAGGCACCCACTGATCTATCACGGCTGCCCATCAATGTTGAGCCGCCTGATGACATCACTGCGACGTTGATAGAACACCAAACCTCTTGGCAAATGCAGGTCAGCTCTGTTGTGAGTGTGCCAGTGAGCCAGGAGAATGGAAGTGAAGGTTTGCAATCAGCAGACGCCCAGCAGGCGTACAATGGCGACAACTTCTCGGACACCAACTGCGACTCTTTCTACTGTGAGGTTTGCTTCCAGCAGTATCCCACTGCAGCTGAGTTGGAGAGACATCTGCTCGCCACCCACTTCAAGGACCAACCAAGGGTGCGACTGCAACGTTTGAGCTGCAGAAAATGCAAAGCAACATTCTCCAACCGCAGAACACTACACAAACACATTGCCAGTCACAGAAGTGTGGTGCAGTGTCCTGAATGtgacaaaagtttcaaaaatcaaGCCAGTCTGGGATCCCACATGCGCATACACAAACGCACTCTCAAACAACCTCCCAAACCATCAGGTCCTAACCTGGAAATGACCTGTCTCAATGAAGGTGAAATTCCCAAACTCAAGTTCAAGCTGAAGAAATATGTCTGCAaagtttgtcaattaaaactcACCTCCAAGACAAAAATGCTGAACCACCTATTTACAGAACACTGTGACGAACAGTCTGCTTCAGAAAGTGAACCAGAGTTCAATTGCAACATCTGTGATTTCCAGGCAAAGTCAAGCACCTTGCTTGACGAACACATTGCAACTCACCCCAAATGTAAGCTTTGTGATGTGACCTTTGCGACTCTTGAACTTCTCAAAGAGCATGAAGTTGTACATGAACGGACTAAAGTTGAACCTTTGGTAGAAATTGTGGAGCCTACTGAGGATGCTGAGGACTCAAACAGCACTGCAGATTTCAATAATGAAGATGGTGGGGATCAGAACTTTGATGATAGTGAAGAAGATGTGAAACCTaaagaggaagaagaagaagagaatGATGACGATTTTCCTGCAAATTTAAGTGTCAAACCATCAAAAATAACAGCTCCAGACGTCAGAAACGTTATCAGTCTCTGGGAAAGAGCCAACTCAGATATCTTTGCCTGCAATTTCTGCCTTCTCAACTATCCTAGCAAACATGCTCTCTACAAGCATGCTGAAACCTACCATACTGATAAAAATGCGCCACAAAAACCCAGGGCATTCAGCAAACATGTTTCTATCGGTCCATTCAAGTGTGATTTATGCCCTTCATCATTTACAACCATGTGTTCCCTGGTGGATCATAAATTGCGACATCGCTGCATCGTCCCTTACATCTGCAAGTTCTGTACTAAAATGTACATGAGTAGGAAGAACTTGGCAAATCATTGCTACAAGCAGCACCCCACTGAGTTGGAAGTGGCTCTTTTAGATTCAGAACAACCTAGGGCGGAGGGGGAAACACCGTTAAAGAAACTGAATAATCCCAGTTACATTGAACCAACGGAGGAAGATAAAATCAGCAAACGGAGAATTCTTCTTGTTTGCTCCCTGTGCAAAATTAGATTCAAATCGTTGTTCCAGTTGTATAAACACAGCGTCCAGAAGCATATGGACAAAACTCGTATTGTGAAAGTTAAGAACTTGAGAAGTAAAGGTCCATACAGTTGCAGTATGTGTAAATTTAGATTCGAAAAATTGTCGGTAATGAGATTGCACATGTTGCGTCACTTTCATCTGAAACCGTACATGTGTAAGCATTGTGGACAGTTGAATGCTCGGAGACGATTCACTCATCTGCACATGATGGAGGAGCACACTTCAGAGTATGCCACACAGTATCGCAAAGTGACATCCCAGAGGACCGCCAGAAACATAGAGCAGGCGACTGAGAAATGGAGGAGAAAAACGTTCACCTGTGATGAATGCAACATTGTGTTCAAGAAGTTAAAGGATTTGAGGACCCACATTGCCGATGTTCACCTCAGAGATTTGGTGACCAGAAGTTTGCCCTCCAAGTCCAGCAGAGATGACAAATCCGAGGAGTTTGAAGCTCAATTCCGTGAAGATTTCTACCCTGACAGGAGGGTACAATACGAGCCACACACTTGCTTCCAGTGtggtatgaaatattttaggaAGCATTTGCTTGTCTATCATATGAAAGAGCAACACGGTACAGAGTACAATGTTAAATCTTTTGCCTATCATTGCAGAAAATGCAAGAAATATTACAACAAGAGATATGAGTTGAGAGAACATGAAATGATTGTTCATCTCGGGATCAAGCCTTATAGATGTAAATTGTGTGTTAATGTTTCATTCAGAAATCGTGGCAGTCTTTACCTTCATCGTAAAAATCATCACCCTAAAGAATTCGCAAATCGTAGAAAAAGCACGAGAAGTACAACAAAAAGTGCAGCAGCCAGTGAAACCGAGAAAGATTCGGAGCCTGTTGCCATTCTAGAAGCACCCTCAGATGCAGCTGCAGTAAGTAAACCTCCAGAGTGCTACAGATGTAACGAATGCGAGCAAGTTTTCAAGAAGAAAGAAGCTGTAACAGATCACATCAAAGTTCATTTGAATTTACCATTCAAATGTAATTTGTGTCCTACCAAATTTAAAACTCCTAAGAAGCTACGACTTCATTTTTGTAACACCAAAAAATATCCATTCTTCTGTACCGTCTGTGGCAAGAGATTCAAGACTAAAACTGAACTTTTGATCCATCGTAGCAAACATCGCAAGACAATAATTTGTGAGACCTGTGGCAAAGGTTTTATCAATGCCGCCTGCTTGATCCGACATACTGCATGTTACCACGAGGCACCTAAATTCCTGTGTCCCGAATGTGGCGCTATGTTCTCGTTACAAAACCAGCTAGACAGACACTTGAAGAACCATAAGGAGATGAAGCATGTATGTGTTGACTGTCCACGCAAGTTCTGGGACATTCGGCAACTTCAGCAACATCGTAACATGGAGCACAAAGAGAAACGCTTCATCTGCGAGCTCTGTGGAAGAGCGCTGTCTCAGAAATGGCACTACGAGTCTCACATGAGCCGACACAACGGGGAGAGAAAGTACGGTTGTGAGGATTGCGGCAAGTCGTACACCAGCATCAATGCCCTCAAGTACCACAATAGAACCAGACACCCTGAGCGTCTCAAGAAGAAGACGGACCAGCCTGTGAAACGCAACAGGAACAAGAACATTCCCACTCCAGCTCTGAATGTACCTCTCCCGGAATGTCCTCAAGTTTTCCCACCAGATCTGCATAACAACTTCATGTTGTTCAATCAACCCAATATGTATCCATTCAATAACCCACAGTTCTCCATTAATTACAACAATActtataattatcaataa
- Protein Sequence
- MFECVLVPGELENQGALAVQPLTVEEDLQPPDSPPELDDDVAIKEEPPDPIVNEAPTDLSRLPINVEPPDDITATLIEHQTSWQMQVSSVVSVPVSQENGSEGLQSADAQQAYNGDNFSDTNCDSFYCEVCFQQYPTAAELERHLLATHFKDQPRVRLQRLSCRKCKATFSNRRTLHKHIASHRSVVQCPECDKSFKNQASLGSHMRIHKRTLKQPPKPSGPNLEMTCLNEGEIPKLKFKLKKYVCKVCQLKLTSKTKMLNHLFTEHCDEQSASESEPEFNCNICDFQAKSSTLLDEHIATHPKCKLCDVTFATLELLKEHEVVHERTKVEPLVEIVEPTEDAEDSNSTADFNNEDGGDQNFDDSEEDVKPKEEEEEENDDDFPANLSVKPSKITAPDVRNVISLWERANSDIFACNFCLLNYPSKHALYKHAETYHTDKNAPQKPRAFSKHVSIGPFKCDLCPSSFTTMCSLVDHKLRHRCIVPYICKFCTKMYMSRKNLANHCYKQHPTELEVALLDSEQPRAEGETPLKKLNNPSYIEPTEEDKISKRRILLVCSLCKIRFKSLFQLYKHSVQKHMDKTRIVKVKNLRSKGPYSCSMCKFRFEKLSVMRLHMLRHFHLKPYMCKHCGQLNARRRFTHLHMMEEHTSEYATQYRKVTSQRTARNIEQATEKWRRKTFTCDECNIVFKKLKDLRTHIADVHLRDLVTRSLPSKSSRDDKSEEFEAQFREDFYPDRRVQYEPHTCFQCGMKYFRKHLLVYHMKEQHGTEYNVKSFAYHCRKCKKYYNKRYELREHEMIVHLGIKPYRCKLCVNVSFRNRGSLYLHRKNHHPKEFANRRKSTRSTTKSAAASETEKDSEPVAILEAPSDAAAVSKPPECYRCNECEQVFKKKEAVTDHIKVHLNLPFKCNLCPTKFKTPKKLRLHFCNTKKYPFFCTVCGKRFKTKTELLIHRSKHRKTIICETCGKGFINAACLIRHTACYHEAPKFLCPECGAMFSLQNQLDRHLKNHKEMKHVCVDCPRKFWDIRQLQQHRNMEHKEKRFICELCGRALSQKWHYESHMSRHNGERKYGCEDCGKSYTSINALKYHNRTRHPERLKKKTDQPVKRNRNKNIPTPALNVPLPECPQVFPPDLHNNFMLFNQPNMYPFNNPQFSINYNNTYNYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -