Edan017740.1
Basic Information
- Insect
- Ephemera danica
- Gene Symbol
- Znf784
- Assembly
- GCA_000507165.2
- Location
- AYNC02016294.1:2475-6900[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.71 48 4.7 4.5 1 23 249 272 249 272 0.96 2 22 0.0002 0.014 15.9 3.5 2 23 277 300 276 300 0.95 3 22 0.00011 0.0074 16.7 1.4 2 23 320 341 319 341 0.96 4 22 0.074 5 7.8 2.1 1 23 347 370 347 370 0.95 5 22 4.7e-07 3.1e-05 24.2 1.3 3 23 381 401 380 401 0.99 6 22 0.041 2.8 8.6 5.2 1 20 407 426 407 429 0.95 7 22 0.00035 0.023 15.1 2.5 1 23 435 458 435 458 0.96 8 22 3.1e-05 0.0021 18.4 0.7 2 23 467 488 467 488 0.97 9 22 0.0047 0.32 11.6 5.9 2 23 495 516 494 516 0.96 10 22 2.7e-06 0.00018 21.8 0.6 1 23 522 544 522 544 0.98 11 22 0.015 1 10.0 6.8 1 23 550 572 550 572 0.97 12 22 0.00025 0.017 15.6 1.9 1 23 578 600 578 600 0.96 13 22 1.1e-05 0.00073 19.9 1.1 1 23 751 773 751 773 0.98 14 22 0.093 6.3 7.5 2.2 1 23 779 802 779 803 0.94 15 22 0.00018 0.012 16.0 3.1 3 23 810 830 808 830 0.97 16 22 0.0016 0.11 13.1 2.2 1 23 836 859 836 859 0.95 17 22 0.062 4.2 8.0 2.6 1 23 864 885 864 885 0.97 18 22 0.1 7 7.3 6.2 1 23 892 914 892 914 0.96 19 22 0.014 0.92 10.1 3.8 1 23 920 942 920 942 0.98 20 22 0.00025 0.017 15.6 0.6 1 23 948 970 948 970 0.98 21 22 6.3e-07 4.3e-05 23.7 1.2 1 23 976 998 976 998 0.97 22 22 0.0015 0.099 13.2 0.2 1 23 1003 1026 1003 1026 0.94
Sequence Information
- Coding Sequence
- TTGCCGTGGAGCCCCCTCGATTATGTGGAGACACGgataaaagttgaaaatgacGGCTATGAGGAAGGAGGTTTTGAGAGCTCGCAATATTGTCATTTCATGACTTCCAAGGACACCaacaatgatgatgatgatgatgatgatgatttggAGGAGTTGGATGATGACGATGATGATTCGTCCAGCGAATCGACTTCTGATTCGATACAAGAGTTGGAGTATACGCCACCGCCTCAGCAACAGGCTGCTCCAATACCGGCACAGCCCAGTATACCGCCTCAATTACCTCCAAAGCCTGTGCCAGTAGAGAAAACCATCACACAGTTGTCTCCCTACGTCCCCAGTCCCACGTCACTGATGCCTCCGAGTCCCATGTTGGCCAGTCCCATCCCACCCCTGCCTCACAATTCCATGGTGCCCCCAATGATGTCCTCTAACTCCATGCTGCCCATGCATCCCAATCAAAACATGCTCCACAATAATCCAATGGTTGCAAATCCAATGCTTCAAAATAGTCCAATGCTTCACAATCAAATGATGCACAACCCGATGATGTCGAATAACATGGGGCTACACAACATGCCGAGCAATCAAATTATGCAAACCAACCAtatgatgcagcagcagcatacTTTGCCCCCTCAGCAGCCACCCCCTCCTCCACCGATACAGCAACCCCCTCCACCACCTCAAAATGTACTACAGTACACACAACCCCCACCCCCACCTGTATCGTCTCATAACTTTCAGTGCAAATATTGTAACAATCTCTGCTCCTCGTTTGAGGCGTTGCATGAGCATCTCGTCACAAAGCATCAGATCAAGTTGAGCTGTAACAGAACCAAGTGTAAGAAAACCTTCAATTCACACGATGCACTTGCGAGACACATCAAAAAACATGACGACGATAGAGCTAGGAAACAGGAAGCGAAGGAGAGAAGGAAGGCAATCGAGTTGACCTgtaaaatctgtggtaaaatgTCAACAACCAACTATAAATTCCGTCTGCATATGATCCAACATTCGGGCAATTTGCCTTTCCCATGTTCATTGTGTGATAAAGCGTTTCTGGAGAAATGTCGTCTGGCGCACCACATGTTGGTGAACCATCCTGACCCTAACGTTCCTAAGCCCCACGGCTGCAAGTATTGCGGCAAGCGCTTCACTGACAAGAGCTACTTGAAGGTGCACGAGCGTAGTCACACCAAAGAGCGGCCATACATTTGTGAGCAGTGCGGAAAGTCGTTCCCGTGTCGCAACTCTCTGAAGCGGCACCGAGACTGCCACAGCGAGGTGAAGAAGTACCGCTGCGAGATCTGTGGCAAAATGTTCAAATTCATCACCACACTGAGTACCCATAGGTACAGGAAGCACAAGAACCCCAGACAAAAGACGGAAGTGTGCAAACAGTGCGGGGCAGCATTCACCACTCGATATTTACTCAAAGTTCACTTCAAGActcataaaattcaaataccTCTGTGTTGTGATTTCTGTGGGAAGCATTTTATAAACCGCAAACGCATGGCCACACACATGAAAACACACCTCAACATTCGAGCCCATGTCTGTGAGATCTGCGGTAGAGACTTCATTGGTTCCAGCACGCTGAAGCAGCACATGTTGACCCACACGGGAGCGCGACCTCACGAGTGTCATGTGTGCCACCAACGCTTTGCACAAATCACAGCCCTCAAAACGCATTTCAAGCGTCACCCCAACATCCTACCGTTCAAGTGCCAGTTGTGTGGGCAGAGTTTCCGCCTCAAGTCCGAGTACAACACGCACAGTGAGAGTCACGGAGGCGACGTAGGGGTCGTGGAGAACCTGTCCAACAACGCGACACAAAGCTCTCAGAACCCTCCATTCCCTCTAGCGCCCCAGTGCCCCACCTTCCAGATGTCGAAACTGCAATCCGAGTTTAACTTACATGAGCAGTTTCATTCAATTAAAGCTTTGTACGCACATTACAAAAAGGAACATTCGGCAAAGAACAAGTATTCGCTGTTCGACGATAGTTTAATGACGTCACCTGCCACTAAAGTTGgtgacaaaacaaaaaataaagttaacgaCGAGTCACTTACAAACGAGAAAAATAAAGAATCCGTAGCTACACTTACAAATGGTAAACCGAAAAAGACACATAAtgcagtgaaaataaaattaagagatGAAAGCAAAAAGGAAGGTAAAAAGAAAGTCAAAAAGGTTAGGCGAGTTTCAAACAAAGTTACTAAAGAATACGTTTTCCCTTGTAAGATTTGTCGCAAAAAATTCAATCGTGCAGTGAAATTGCGAGATCACATGGCCAAACACACTGGcgagaaaaattttcattgcgaAGAGTGTGGGTCGCGATTTTATGGCAAAGACGACATACGTTACCATCAGGTGATGGTGCACCATCACAAGGGCGCCCTCTTCTGCAAGTACTGCAAGCGATGCTTCTTTCAGCGGGGTGCCTTGGAGGTACACGAGCGAACACATACAGGGGAGAGACCGTTCCAATGCGTGACTTGCTCGAAAACGTTTATTGGCAAACTTCACCTGTCCAGGCACATTGAGTATCAACATGACCCCAAGTTGTACGAATGCAAACCATGCAAGAAAAAGTTCTCGCGCCTGGGACTGCAGCAGCATAAGCGTACTCACATGCCCAGGATCAAAAGTCACTTTTGCACTTACTGTTGTTTGTCGTTCTTCAAACTGAGTGGTTTGCTGCGTCACATTCGCACACACACCAAGGAGAAACCTTTCTCCTGTGATCTGTGCAGGAAACGCTTCACGTGTAAGCCAGACCTGTTGTCGCACATCAAGAAGCACTTGGGCATCAAGCCCTACGAGTGTAAGGCGTGCGGCAAGTGTTTTGCTGACAACGCGCGGCTCGTTCTTCACAACAGGGTTCATTCAGGGGAGCGACCGTTCGCGTGCCCTCTGTGTCGCAAGTCATTTACGCAAACGAGCACTCTGAAACGTCACATTGAAACGCACGGCGCGTTACCTTACGCCTGCAGCATTTGCGTGCAGGGCTTTAAAACGAGCAAAGACCTCACGCTGCACAACAATGTGGCTCATGCGATTCCCCAGGAGACCTACGTCAAGAGTTTTATCTTCCTCAACACTTAA
- Protein Sequence
- LPWSPLDYVETRIKVENDGYEEGGFESSQYCHFMTSKDTNNDDDDDDDDLEELDDDDDDSSSESTSDSIQELEYTPPPQQQAAPIPAQPSIPPQLPPKPVPVEKTITQLSPYVPSPTSLMPPSPMLASPIPPLPHNSMVPPMMSSNSMLPMHPNQNMLHNNPMVANPMLQNSPMLHNQMMHNPMMSNNMGLHNMPSNQIMQTNHMMQQQHTLPPQQPPPPPPIQQPPPPPQNVLQYTQPPPPPVSSHNFQCKYCNNLCSSFEALHEHLVTKHQIKLSCNRTKCKKTFNSHDALARHIKKHDDDRARKQEAKERRKAIELTCKICGKMSTTNYKFRLHMIQHSGNLPFPCSLCDKAFLEKCRLAHHMLVNHPDPNVPKPHGCKYCGKRFTDKSYLKVHERSHTKERPYICEQCGKSFPCRNSLKRHRDCHSEVKKYRCEICGKMFKFITTLSTHRYRKHKNPRQKTEVCKQCGAAFTTRYLLKVHFKTHKIQIPLCCDFCGKHFINRKRMATHMKTHLNIRAHVCEICGRDFIGSSTLKQHMLTHTGARPHECHVCHQRFAQITALKTHFKRHPNILPFKCQLCGQSFRLKSEYNTHSESHGGDVGVVENLSNNATQSSQNPPFPLAPQCPTFQMSKLQSEFNLHEQFHSIKALYAHYKKEHSAKNKYSLFDDSLMTSPATKVGDKTKNKVNDESLTNEKNKESVATLTNGKPKKTHNAVKIKLRDESKKEGKKKVKKVRRVSNKVTKEYVFPCKICRKKFNRAVKLRDHMAKHTGEKNFHCEECGSRFYGKDDIRYHQVMVHHHKGALFCKYCKRCFFQRGALEVHERTHTGERPFQCVTCSKTFIGKLHLSRHIEYQHDPKLYECKPCKKKFSRLGLQQHKRTHMPRIKSHFCTYCCLSFFKLSGLLRHIRTHTKEKPFSCDLCRKRFTCKPDLLSHIKKHLGIKPYECKACGKCFADNARLVLHNRVHSGERPFACPLCRKSFTQTSTLKRHIETHGALPYACSICVQGFKTSKDLTLHNNVAHAIPQETYVKSFIFLNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -