Edan013731.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ephemera danica
Gene Symbol
-
Assembly
GCA_000507165.2
Location
KZ498146.1:108782-118445[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.2e-05 0.00078 19.8 0.4 2 23 343 364 342 364 0.97
2 18 0.038 2.5 8.7 3.3 1 20 370 389 370 392 0.92
3 18 1.3e-05 0.00085 19.7 0.9 1 23 398 420 398 420 0.99
4 18 0.0036 0.24 11.9 7.8 1 21 426 446 426 448 0.93
5 18 2.2e-05 0.0015 18.9 4.6 1 23 454 476 454 476 0.99
6 18 2.2e-05 0.0015 18.9 5.3 1 23 482 504 482 504 0.97
7 18 1.3e-06 8.9e-05 22.7 4.8 1 23 510 532 510 532 0.96
8 18 8.3e-08 5.6e-06 26.5 2.7 1 23 538 560 538 560 0.98
9 18 6.2e-05 0.0042 17.5 6.7 1 23 566 588 566 588 0.97
10 18 6.1e-05 0.0041 17.5 5.7 1 23 594 616 594 616 0.97
11 18 2.6e-06 0.00017 21.8 3.1 1 23 622 644 622 644 0.98
12 18 2.9e-06 0.0002 21.6 8.0 1 23 650 672 650 672 0.98
13 18 4.7e-05 0.0032 17.8 8.3 1 23 678 700 678 700 0.98
14 18 8e-06 0.00054 20.3 7.7 1 23 706 728 706 728 0.98
15 18 0.0059 0.4 11.3 8.4 1 21 734 754 734 756 0.94
16 18 0.00014 0.0095 16.4 0.2 1 23 762 784 762 784 0.97
17 18 0.0096 0.65 10.6 4.1 1 23 790 812 790 812 0.98
18 18 3e-07 2.1e-05 24.7 0.6 1 23 818 840 818 840 0.98

Sequence Information

Coding Sequence
atgatGAATAATGATGGTCATAGTCTCTCCCCATCGACTGCTGGAGTTCATCCAGAGGAACCGGGAGGCTCGAGGGCCTCAGTGCCCCCAGCTGCTCACTCGGGCAGCCCAGCAGACCTCAGAGTTGGTACGGCTGTTGCATTCTCCAACGTAGCCAAGTACTTGGTGTTGACCAATCTGTTTCCTGGGCCCATACCACAGGTCTATGGACTACACAGGGGCGAGAAAATTGTGCCAGAGATCCAGCAGTGCAACGTAACAGAAGGCCTACATCACCATTCTCAAAGCATGTCGCTGATCCAGAGCACCTCGGGAGGGCACCTCAGTGGTCACCACCACTCCACCACCACCACGTCCACCACCCTGCACACCCTCTCTAGTCTGGGCCACTCACCCCCCGGTCACATGGAGGTGGTGGACTCGAAGAAGATGGACAAGTCGACGTGCACCAACGAGCGCCAGCAGGAGCAGCCAGGGGGCACGAGCAGCTTGGTGCACTGCGAGGTGCAGTGTGACCTGCAGCTGCACACGGCCACCTCGGAGGCTCAGCAGTTGACCTTGGTGTCTGGGACGGCACTCCAGTTGCAGGACCCGCTGTCTCTTGGCGACAAGAACAGCGACAGACACATGGAGGTCAAGAGCGAAATGAAGCCACTGGTCACAGGATGCAAGGAGGCCACCAGGCAGATTGCAATGCTGGGGTTCCCTGGACATGACATTAAAGGTCCCATGGAAATTCGCAGTCCGGATGGCAGCATCGTGAAGGCCTCACCCATCAATGACCCTGAGCTGGCCAAGACGTTGGGTGTCGAGGTGGTGCAGAACATGTACAAGGTCAATGTGGACGACATCAACCAACTTCTAGCCTACCACGAAGTCTTCGGCAAACTGCAGAATGAAATTGTTCTGAACACAGGGGGAGGCACTGCAACTCCCACCATCACCTGCGCCCCCTCCAAGCCTGGTCCTGGCTCCGTCATATCTGAAACTTCCCCTCCCACCCCTCTGTCGCCTGGGAGCTCTCAGTCCTGCGACCTGTGCGGCAAGATGTTCCCCTACAGATACCAACTGATCGTGCATCGTCGTTACCACACAGAGAAGAAGCCTTTCACGTGTCAAGTGTGCGGCAAAGCCTTTGCCTGCAATACTGAGCTGGCTCGCCACGGCAAGTGCCACCTAGGAGGCAGTCTGTACACGTGTGGTGTCTGTTTCCATGTGTTTGCCAATGCCAGTGGCCTCGAGAGACACCAGAAACGCCACGCAGGTGACAAGCCTTACTGCTGCACCACTTGTGGCAAGTCGTTTGCTAGGAAGGAGCACCTGGACAACCACAATCGCTGTCACACTGGCGAGACCCCGTACAGATGTCAGTACTGTGCCAAGACCTTCACCAGGAAGGAGCATATGGTGAACCATGTGAGGAAACACACAGGAGAGACCCCTCATCGCTGCGACATCTGCAAGAAGTCCTTCACTCGCAAGGAGCATTTCATGAACCACGTCATGTGGCACACTGGGGAAACTCCTCACGCCTGCCAGATCTGTGGCAAGAAGTATACGAGGAAGGAACATTTGAGCAACCACATGCGCAGCCACACCAACGACACTCCCTTCAGGTGTGAAATCTGCGGCAAGTCCTTCACTCGCAAGGAGCACTTCACAAACCACATCATGTGGCACACTGGGGAGACCCCGCATCGCTGTGATTTCTGCTCCAAGACCTTCACTCGTAAGGAGCATTTGTTGAACCATGTTCGGCAACACACAGGAGAGTCGCCACATCGCTGTGGCTTCTGCTCCAAGTCCTTCACCCGTAAGGAGCATTTAGTGAACCATGTGCGCCAACACACAGGGGAGACACCGTTCCGCTGCCAGTTCTGTCCCAAAGCCTTCACCAGGAAGGACCATTTGGTGAACCACGTGAGACAGCACACGGGCGAGTCTCCACACAAGTGCCAGTACTGCACCAAGACGTTCACACGCAAGGAGCACCTCACCAACCACATTCGGCAACACACAGGCGAGTCTCCCCATCGCTGCCACTTCTGTTCCAAGACGTTCACGAGAAAGGAGCACCTCGTGAATCACGTGCGCATCCACACCGGAGAATCCCCCCACCGGTGTGATTTCTGCAACAAGACGTTCACGCGCAAGGAGCACTTGACAAACCACCTGAGACAGCACACTGGGGAGACCCCACATTGCTGCACAGTGTGCGCCAAACCTTTCACTCGCAAGGAGCACTTGTTGAACCACATGAGGTGTCACACAGGCGAGCGACCCTTCGCATGTGGAGAGTGTGGAAAATCCTTCCCTCTGAAGGGCAACTTGCTGTTCCACCAGCGGTCTCACCAGCGAGAGCGACCTTTCAATTGCGAGATCTGCGGCAAAGATTTCATGTGCAAAGGTCACCTAGTGAGCCACAAACGGAGTCATTCTGCCGACCGGCCGTACAGCTGTGGCGACTGTGGCAAGTCCTTCGTCGAGAAAGGCAACATGCTGCGGCACATGAAGAAACACGGAGAACAAGCCAGCCCCCCCACCCCCCAGCCTCCTGTAGTGTCAGTGCCCACTTTACCCACCAATAACAACGTGGCTGTCCTTGCAGCTTCATATTAA
Protein Sequence
MMNNDGHSLSPSTAGVHPEEPGGSRASVPPAAHSGSPADLRVGTAVAFSNVAKYLVLTNLFPGPIPQVYGLHRGEKIVPEIQQCNVTEGLHHHSQSMSLIQSTSGGHLSGHHHSTTTTSTTLHTLSSLGHSPPGHMEVVDSKKMDKSTCTNERQQEQPGGTSSLVHCEVQCDLQLHTATSEAQQLTLVSGTALQLQDPLSLGDKNSDRHMEVKSEMKPLVTGCKEATRQIAMLGFPGHDIKGPMEIRSPDGSIVKASPINDPELAKTLGVEVVQNMYKVNVDDINQLLAYHEVFGKLQNEIVLNTGGGTATPTITCAPSKPGPGSVISETSPPTPLSPGSSQSCDLCGKMFPYRYQLIVHRRYHTEKKPFTCQVCGKAFACNTELARHGKCHLGGSLYTCGVCFHVFANASGLERHQKRHAGDKPYCCTTCGKSFARKEHLDNHNRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHACQICGKKYTRKEHLSNHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHVRQHTGETPFRCQFCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKTFTRKEHLTNHIRQHTGESPHRCHFCSKTFTRKEHLVNHVRIHTGESPHRCDFCNKTFTRKEHLTNHLRQHTGETPHCCTVCAKPFTRKEHLLNHMRCHTGERPFACGECGKSFPLKGNLLFHQRSHQRERPFNCEICGKDFMCKGHLVSHKRSHSADRPYSCGDCGKSFVEKGNMLRHMKKHGEQASPPTPQPPVVSVPTLPTNNNVAVLAASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00630871;
90% Identity
-
80% Identity
-